PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_28482-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 287aa    MW: 31407.5 Da    PI: 8.4187
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_28482-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.70.00018260281323
                      ETTTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   3 CpdCgksFsrksnLkrHirt.H 23 
                      Cp+C+k F ++ +L+ H  + H
  TRIUR3_28482-P1 260 CPKCSKGFQDPVLLVEHVEReH 281
                      *****************99888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1183106.67E-13650No hitNo description
PROSITE profilePS510397.3931059IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.101.4E-91152IPR000058Zinc finger, AN1-type
SMARTSM001540.0271352IPR000058Zinc finger, AN1-type
PfamPF014289.6E-131351IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.103.2E-991151IPR000058Zinc finger, AN1-type
SuperFamilySSF1183101.81E-993146No hitNo description
PROSITE profilePS510397.80398145IPR000058Zinc finger, AN1-type
SMARTSM001540.05101142IPR000058Zinc finger, AN1-type
PfamPF014284.2E-8101140IPR000058Zinc finger, AN1-type
SMARTSM003550.8221244IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280223244IPR007087Zinc finger, C2H2
PROSITE profilePS501578.683258286IPR007087Zinc finger, C2H2
SMARTSM0035512258281IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280260281IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MGTPEFPDLG RHCSVGDCHQ IDFLPFTCDR CDFVFCLQHR SYTSHKCPKA NNKDVTVVVC  60
PLCAKGVRLN PNEDANITWE SHVNTDCDPS NYQRATKKKK CPVPGCREQL TFSNTIMCKD  120
CSKEHCLKHR FGPDHKCPGP RKPEPTFPFA NMLRRSQKVE PRANSSGSGS SWWSSSLLNA  180
ASSFRSSAEA RMQKLGIATS EAVQKAKDGV TPSSSGGGLV EQCVQCPARF STVGALIEHA  240
EKSHGNNSQP SRGKVTIDAC PKCSKGFQDP VLLVEHVERE HGGTSKA
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in environmental stress response. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00306DAPTransfer from AT2G41835Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, dehydration and salt stress. {ECO:0000269|PubMed:17033811}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2513470.0AK251347.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf113d20, mRNA sequence.
GenBankAK3609830.0AK360983.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1130A19.
GenBankAK3671740.0AK367174.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2052H13.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020157729.10.0zinc finger AN1 and C2H2 domain-containing stress-associated protein 16-like
SwissprotQ0D5B91e-159SAP16_ORYSJ; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 16
TrEMBLT1ND610.0T1ND61_TRIUA; Uncharacterized protein
STRINGTRIUR3_28482-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47633342
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41835.11e-115C2H2 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]