PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIUR3_28106-P1

Organism

Triticum urartu

Taxonomic ID

4572

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

GRAS

Protein Properties

Length: 132aa MW: 14477.7 Da PI: 7.6756

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIUR3_28106-P1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	138.9	5.2e-43	1	132	120	263
GRAS 120 sqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrl 213 +qGlQWp L++ LasRp+gpp++R+Tg+g+ s ++le+tg+rL++fA++lg+pfef + va++ +l++e+L v ++Ea+aV++ + h+l TRIUR3_28106-P1 1 MQGLQWPGLFHILASRPGGPPRVRLTGLGA----SMDALEATGKRLSDFADTLGLPFEFCP-VADKAGNLDPEKLGVTRREAVAVHWLH--HSL 87 69**************************....***********************.7*********************9..999 PP GRAS 214 ldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealey 263 +d ++s ++ +L l+k+l Pkvv++veq++ h ++sFl+rf+ea++y TRIUR3_28106-P1 88 YDVTGSDSN----TLCLIKRLAPKVVTMVEQDLRH-TGSFLARFVEAIHY 132 999999999....******************.889*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	26.73	1	132	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.8E-40	1	132	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 132 aa Download sequence Send to blast
MQGLQWPGLF HILASRPGGP PRVRLTGLGA SMDALEATGK RLSDFADTLG LPFEFCPVAD 60 KAGNLDPEKL GVTRREAVAV HWLHHSLYDV TGSDSNTLCL IKRLAPKVVT MVEQDLRHTG 120 SFLARFVEAI HY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	7e-77	1	132	138	269	Protein SCARECROW
5b3h_A	7e-77	1	132	137	268	Protein SCARECROW
5b3h_D	7e-77	1	132	137	268	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in asmmetric cell division in the cortex/endodermis progenitor cell and in the process of stomata and ligule formation in leaves. {ECO:0000250}.
UniProt	Probable transcription factor involved in asmmetric cell division in the cortex/endodermis progenitor cell and in the process of stomata and ligule formation in leaves. {ECO:0000269\|PubMed:12974810}.
UniProt	Transcription factor required for quiescent center cells specification and maintenance of surrounding stem cells, and for the asymmetric cell division involved in radial pattern formation in roots. Essential for cell division but not differentiation of the ground tissue. Regulates the radial organization of the shoot axial organs. Restricts SHR movment and sequesters it into the nucleus of the endodermis (By similarity). {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK359827	0.0	AK359827.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1103O07.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020186306.1	8e-90	protein SCARECROW 1-like
Swissprot	A2ZAX5	2e-84	SCR1_ORYSI; Protein SCARECROW 1
Swissprot	A2ZHL0	2e-84	SCR2_ORYSI; Protein SCARECROW 2
Swissprot	Q2QYF3	2e-84	SCR2_ORYSJ; Protein SCARECROW 2
TrEMBL	A0A446SXV9	4e-92	A0A446SXV9_TRITD; Uncharacterized protein
TrEMBL	A0A446U3H8	3e-92	A0A446U3H8_TRITD; Uncharacterized protein
TrEMBL	A0A453KC45	5e-89	A0A453KC45_AEGTS; Uncharacterized protein
TrEMBL	A0A453KCP7	5e-89	A0A453KCP7_AEGTS; Uncharacterized protein
TrEMBL	T1NC49	9e-93	T1NC49_TRIUA; Uncharacterized protein
STRING	Traes_5BL_C02570726.1	8e-90	(Triticum aestivum)
STRING	Traes_5DL_3EC609F62.1	5e-93	(Triticum aestivum)
STRING	TRIUR3_28106-P1	1e-93	(Triticum urartu)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1371	38	122

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54220.1	4e-76	GRAS family protein

Publications ? help Back to Top
Kamiya N, et al. Rice globular embryo 4 (gle4) mutant is defective in radial pattern formation during embryogenesis. Plant Cell Physiol., 2003. 44(9): p. 875-83 [PMID:14519768] Lim J, et al. Conservation and diversification of SCARECROW in maize. Plant Mol. Biol., 2005. 59(4): p. 619-30 [PMID:16244911] Kaur P, et al. Genes controlling plant growth habit in Leymus (Triticeae): maize barren stalk1 (ba1), rice lax panicle, and wheat tiller inhibition (tin3) genes as possible candidates. Funct. Integr. Genomics, 2008. 8(4): p. 375-86 [PMID:18543009] Sazuka T, et al. A rice tryptophan deficient dwarf mutant, tdd1, contains a reduced level of indole acetic acid and develops abnormal flowers and organless embryos. Plant J., 2009. 60(2): p. 227-41 [PMID:19682283] Fan T, et al. Rice osa-miR171c Mediates Phase Change from Vegetative to Reproductive Development and Shoot Apical Meristem Maintenance by Repressing Four OsHAM Transcription Factors. PLoS ONE, 2015. 10(5): p. e0125833 [PMID:26023934] Yi J, et al. OsMPK6 plays a critical role in cell differentiation during early embryogenesis in Oryza sativa. J. Exp. Bot., 2016. 67(8): p. 2425-37 [PMID:26912801] Li S, et al. Crystal Structure of the GRAS Domain of SCARECROW-LIKE7 in Oryza sativa. Plant Cell, 2016. 28(5): p. 1025-34 [PMID:27081181]