PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_28009-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family M-type_MADS
Protein Properties Length: 59aa    MW: 6384.25 Da    PI: 9.4569
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_28009-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF49.36.3e-16750850
                     HHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T.TSEEEEEE CS
           SRF-TF  8 nrqvtfskRrngilKKAeELSvLCdaevaviifss.tgklyeys 50
                     +r + f kRr+g+ KKAeEL  LCda+v ++++s+ +g+++ ++
  TRIUR3_28009-P1  7 RRGICFRKRRAGLVKKAEELAMLCDADVGLLVISPfDGTFQRFA 50
                     8999******************************8678887775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006615.671140IPR002100Transcription factor, MADS-box
SMARTSM004325.7E-6252IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.79E-14647IPR002100Transcription factor, MADS-box
PfamPF003193.4E-17747IPR002100Transcription factor, MADS-box
PRINTSPR004044.1E-81429IPR002100Transcription factor, MADS-box
PRINTSPR004044.1E-82950IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 59 aa     Download sequence    Send to blast
XVEAGGRRGI CFRKRRAGLV KKAEELAMLC DADVGLLVIS PFDGTFQRFA APATYVPVP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020147558.14e-25MADS-box transcription factor 51-like isoform X1
TrEMBLT1NBV51e-33T1NBV5_TRIUA; Uncharacterized protein
STRINGTRIUR3_28009-P12e-34(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP154931117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30260.13e-11AGAMOUS-like 79