PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_27908-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family HD-ZIP
Protein Properties Length: 604aa    MW: 66560.2 Da    PI: 6.1424
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_27908-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.11.5e-181873657
                     S--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
         Homeobox  6 tftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                     ++t+eq+e+Le++++++++p+ ++r++L +++    +++ rq+kvWFqNrR ++k+
  TRIUR3_27908-P1 18 RYTPEQVEALERVYAECPKPTSTRRQQLLRECpilsNIEPRQIKVWFQNRRCRDKQ 73
                     79***************************************************996 PP
2START161.18.6e-511533602204
                      HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEE CS
            START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galql 93 
                      +aee+++e+++ka+ ++  Wv ++ +++g+++  +++ s++++g a+ra+g+v  ++++ ve+l d++  W +++++ e+   +  g  g+++l
  TRIUR3_27908-P1 153 IAEETLTEFLSKATGTAVDWVPMPGMKPGPDSFGIVAVSHGCRGVAARACGLVNLEPTKIVEILKDRP-SWFRDCRSLEVFTMLPAGngGTIEL 245
                      6899******************************************************9999999999.****************9999***** PP

                      EEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHH CS
            START  94 mvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrs 183
                       +++++a+++lvp Rdf+++Ry+ ++++g++v++++S++     p+    +++vRae+lpSg+l++p+++g+s v++v+h dl++++++++lr+
  TRIUR3_27908-P1 246 VYMQMYAPTTLVPaRDFWTLRYTTTMEDGSLVVCERSLSGSGGGPStasAQQFVRAEMLPSGYLVRPCDGGGSIVHIVDHLDLEAWSVPEVLRP 339
                      ***************************************9999998888899****************************************** PP

                      HHHHHHHHHHHHHHHHTXXXX CS
            START 184 lvksglaegaktwvatlqrqc 204
                      l++s+++ ++k+++a+l++ +
  TRIUR3_27908-P1 340 LYESSRVVAQKMTTAALRHIR 360
                      *****************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003898.9E-151278IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.608.4E-191773IPR009057Homeodomain-like
SuperFamilySSF466893.29E-161776IPR009057Homeodomain-like
CDDcd000866.39E-171875No hitNo description
PROSITE profilePS5007115.3211874IPR001356Homeobox domain
PfamPF000464.2E-161873IPR001356Homeobox domain
CDDcd146866.51E-667106No hitNo description
PROSITE profilePS5084827.274143371IPR002913START domain
CDDcd088754.53E-74147363No hitNo description
Gene3DG3DSA:3.30.530.205.1E-22151338IPR023393START-like domain
SMARTSM002347.0E-38152362IPR002913START domain
SuperFamilySSF559614.26E-37153364No hitNo description
PfamPF018529.6E-49153360IPR002913START domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 604 aa     Download sequence    Send to blast
MAAAVAAMRC GSGSGSVRYT PEQVEALERV YAECPKPTST RRQQLLRECP ILSNIEPRQI  60
KVWFQNRRCR DKQRKESSRL QAVNRKLSAM NKLLMEENER LQKQVSQLVH ENAYMKQQLQ  120
NPSLANDTSC ESNVTTPPNP LRDASNPAGL LAIAEETLTE FLSKATGTAV DWVPMPGMKP  180
GPDSFGIVAV SHGCRGVAAR ACGLVNLEPT KIVEILKDRP SWFRDCRSLE VFTMLPAGNG  240
GTIELVYMQM YAPTTLVPAR DFWTLRYTTT MEDGSLVVCE RSLSGSGGGP STASAQQFVR  300
AEMLPSGYLV RPCDGGGSIV HIVDHLDLEA WSVPEVLRPL YESSRVVAQK MTTAALRHIR  360
QIAQETSGEV VYALGRQPAV LRTFSQRLSR GFNDAISGFN DDGWSVMAGD GIEDVIIACN  420
SKKIRSNNTA PNAFIAPGGV ICAKASMLLQ SVPPAVLVRF LREHRSEWAD YNFDAYSASA  480
LKSSSCSLPG LRPMRFSGSQ IIMPLAHTVE NEEILEVVRL EGQALDEGLL SRDIHLLQFC  540
TGIDEKSMGS CFQLVFAPID ELFPDDAPLI SSGFRVIPLD MKTVEYPVSL IYCYSEIQDT  600
TFLY
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3620090.0AK362009.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2001M18.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020174778.10.0homeobox-leucine zipper protein HOX9
SwissprotA2Z8L40.0HOX9_ORYSI; Homeobox-leucine zipper protein HOX9
TrEMBLM8A3J10.0M8A3J1_TRIUA; Homeobox-leucine zipper protein HOX9
STRINGTRIUR3_27908-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37438197
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60690.10.0HD-ZIP family protein