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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
TRIUR3_27771-P1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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| Family |
GRAS |
| Protein Properties |
Length: 360aa MW: 39156.6 Da PI: 8.4935 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| TRIUR3_27771-P1 | genome | BGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 105.1 | 9.9e-33 | 1 | 97 | 49 | 142 |
GRAS 49 Laarlarsvselykalppsetsekn...sseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegp 139
++arl++s+ +ly+ lp +++ + s+++aa+++f+ +sP++kfsh+taNqaI ea+e+e+rvHi+D+di+qGlQWp L++ LasRp+gp
TRIUR3_27771-P1 1 MSARLVSSCLGLYAPLPNASSPAASrlvNSRVAAAFQVFNGISPFVKFSHFTANQAIQEAFEREDRVHIVDLDIMQGLQWPGLFHILASRPGGP 94
5799***********976666655567788899999********************************************************** PP
GRAS 140 psl 142
p++
TRIUR3_27771-P1 95 PRF 97
*85 PP
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| 2 | GRAS | 183 | 2e-56 | 97 | 286 | 178 | 374 |
GRAS 178 fnvlvakrledleleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfd 269
f + va + +l++e+L v++ +Ea+aV++ + h+l+d +++ ++ +L+l+++l Pkvv++veq+++h s+sFl+rf+ea++yysalfd
TRIUR3_27771-P1 97 FYP-VAGKAGNLDPEKLGVDTrrREAVAVHWLH--HSLYDVTGNDSN----TLNLIQRLAPKVVTMVEQDLSH-SGSFLARFVEAIHYYSALFD 182
556.5778899******998888*********9..999988888888....**********************.899***************** PP
GRAS 270 sleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWk 363
sl+a+++++s+er++vE++ll+rei+nv+a g +r+ + + +++Wre+l ++GF++++l +aa+qa+lll +++sdgy++ ee+g+l lgWk
TRIUR3_27771-P1 183 SLDASYSEDSSERHVVEQQLLAREIRNVLAVGGPARTGDIK-FGNWREKLAQSGFRAASLAGSAAAQASLLLGMFPSDGYTLVEENGTLKLGWK 275
***********************************999987.**************************************************** PP
GRAS 364 drpLvsvSaWr 374
d L+++SaWr
TRIUR3_27771-P1 276 DLCLLTASAWR 286
**********8 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0008356 | Biological Process | asymmetric cell division |
| GO:0009630 | Biological Process | gravitropism |
| GO:0009956 | Biological Process | radial pattern formation |
| GO:0048366 | Biological Process | leaf development |
| GO:0051457 | Biological Process | maintenance of protein location in nucleus |
| GO:0090610 | Biological Process | bundle sheath cell fate specification |
| GO:0005634 | Cellular Component | nucleus |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 360 aa
Download sequence Send
to blast |
MSARLVSSCL GLYAPLPNAS SPAASRLVNS RVAAAFQVFN GISPFVKFSH FTANQAIQEA 60
FEREDRVHIV DLDIMQGLQW PGLFHILASR PGGPPRFYPV AGKAGNLDPE KLGVDTRRRE 120
AVAVHWLHHS LYDVTGNDSN TLNLIQRLAP KVVTMVEQDL SHSGSFLARF VEAIHYYSAL 180
FDSLDASYSE DSSERHVVEQ QLLAREIRNV LAVGGPARTG DIKFGNWREK LAQSGFRAAS 240
LAGSAAAQAS LLLGMFPSDG YTLVEENGTL KLGWKDLCLL TASAWRPFQA LGAGAVGIPG 300
GVAGGQRRRA GFAAARHVPL RWLHSRRGEW HSEAWMEGSL LAHCICLAPI SGLRPLDLQC
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor required for quiescent center cells specification and maintenance of surrounding stem cells, and for the asymmetric cell division involved in radial pattern formation in roots. Essential for cell division but not differentiation of the ground tissue. Regulates the radial organization of the shoot axial organs. Restricts SHR movment and sequesters it into the nucleus of the endodermis (By similarity). {ECO:0000250, ECO:0000269|PubMed:17446396}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK365059 | 0.0 | AK365059.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2030J22. |
