PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

TRIUR3_27662-P1

Organism

Triticum urartu

Taxonomic ID

4572

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

HB-other

Protein Properties

Length: 1199aa MW: 134615 Da PI: 7.3734

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIUR3_27662-P1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	43.5	5.6e-14	66	117	6	57
S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 + ++ q++ Le+++ + +yp+ e+ +e A+++gLt +qV++WF+ rR ke++ TRIUR3_27662-P1 66 KKSPLQIQMLESFYSEVQYPKPEDLTEYAASVGLTYNQVRIWFKERRRKERR 117 66899*********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	14.382	58	118	IPR001356	Homeobox domain
SMART	SM00389	2.9E-14	60	122	IPR001356	Homeobox domain
SuperFamily	SSF46689	8.98E-14	60	124	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.0E-14	65	125	IPR009057	Homeodomain-like
CDD	cd00086	1.34E-8	65	108	No hit	No description
Pfam	PF00046	2.4E-11	66	117	IPR001356	Homeobox domain
Pfam	PF15612	1.2E-5	702	733	IPR028942	WHIM1 domain
Pfam	PF15613	1.7E-10	825	896	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1199 aa Download sequence Send to blast
MRVASIAVPV PPRRDFAASA PSAGSGNWGL RVFTVTRLLC ELRPDYGFLQ MMAKGFLAKS 60 DNAGTKKSPL QIQMLESFYS EVQYPKPEDL TEYAASVGLT YNQVRIWFKE RRRKERRHME 120 AAEVHVETQA SARSNWPRCS SSRSSNSSQS PMQGIAGLQP EDDITLGRSM SLVGEKHTLR 180 SQVLFPKDYI LRKVFRKDGP SLGGDFDPLP ERAHVHVRGV TLLMFHLKTL PFTVIVYLPC 240 HMWLIPSQYH VELIDAVFNS CRYHRTSFLP GSKRFEEEKG LFFVIRTMDS GNFWARIYNT 300 KSHIMSPTAQ RSTLPFENND PVRKHGKGKE IQDCSSFIDE SGCLRSLRPF EDFGGKLAQK 360 QTLPRKKVNK KSRPAPSKRK VTCGRVTDLK EHPLVECHLS VDESESSELR TEHATLVDDE 420 ELELSELQAG PNPLRCSAHI SSTGRHGCPL CKDLLARFPP TSVRMKQPFP TKPWESSPEM 480 VKKLFQVVRF VYTHFGSMDV HPFTFDEFAQ AFHDKIRREV REQEFDVNFW IKSLNSLTWV 540 EILRQVLVAS GFGSDHHMLN RNFFNKEKNQ MVKYGLRPRT LKGELFALLS KKGSGGLKVA 600 ELAKSPQIIG LNLSGASEVE QLIFSTLSSD ITLFEKIAPS AYRLRVDPRI KGKEDSRSDT 660 EDSGTVDDDG DASSSGDESD GPQESYPEHE SRIISEIDES YSGERWLLGL MEGEYSDLSI 720 DEKLDCLVAL IDVVSGAGSV PRLEEPQSVL SNIQRAQSHA SGGKIKKCTR TIYQSSDEYL 780 NRPGSSHSFD SSMQGQSGSL RSQDYIADSG ANESPTGFAH QPQIVLLGSD RRYNNYWLFL 840 GPCRADDPGH RRVYFESSED GHWEVIDSPQ DLLSLLSVLD IRGTREAHLL ASMKKRQSCL 900 FEGMKKHLED GCVVALTASS DSSHSETSSG NRYSPKPSSG DGASPLSDID SASVPTYLAG 960 NLQNASSAIG IGVGRRSDEK MLKWERLQAL DKWIWTSFYS SLTAVKCGKR SFKESLVHCE 1020 NCHDLYWRDE KHCRICHSTF EVGFDLEERY AIHVATCREP EDLYDVPNHK VLPSQLQALK 1080 AAIHAIEARM PTAAFTGLWM KSSHNLWVKR LRRTSSLPEL LQVLVDFVGA IDEDWLYQRS 1140 SAVSFSSYVD DITVYFQTMP QTTSAVALWV VKLDALIAPH LAQADSGRGL GKGSIQTRA

Sequence ? help Back to Top

Protein Sequence Length: 1199 aa Download sequence Send to blast

MRVASIAVPV PPRRDFAASA PSAGSGNWGL RVFTVTRLLC ELRPDYGFLQ MMAKGFLAKS  60
DNAGTKKSPL QIQMLESFYS EVQYPKPEDL TEYAASVGLT YNQVRIWFKE RRRKERRHME  120
AAEVHVETQA SARSNWPRCS SSRSSNSSQS PMQGIAGLQP EDDITLGRSM SLVGEKHTLR  180
SQVLFPKDYI LRKVFRKDGP SLGGDFDPLP ERAHVHVRGV TLLMFHLKTL PFTVIVYLPC  240
HMWLIPSQYH VELIDAVFNS CRYHRTSFLP GSKRFEEEKG LFFVIRTMDS GNFWARIYNT  300
KSHIMSPTAQ RSTLPFENND PVRKHGKGKE IQDCSSFIDE SGCLRSLRPF EDFGGKLAQK  360
QTLPRKKVNK KSRPAPSKRK VTCGRVTDLK EHPLVECHLS VDESESSELR TEHATLVDDE  420
ELELSELQAG PNPLRCSAHI SSTGRHGCPL CKDLLARFPP TSVRMKQPFP TKPWESSPEM  480
VKKLFQVVRF VYTHFGSMDV HPFTFDEFAQ AFHDKIRREV REQEFDVNFW IKSLNSLTWV  540
EILRQVLVAS GFGSDHHMLN RNFFNKEKNQ MVKYGLRPRT LKGELFALLS KKGSGGLKVA  600
ELAKSPQIIG LNLSGASEVE QLIFSTLSSD ITLFEKIAPS AYRLRVDPRI KGKEDSRSDT  660
EDSGTVDDDG DASSSGDESD GPQESYPEHE SRIISEIDES YSGERWLLGL MEGEYSDLSI  720
DEKLDCLVAL IDVVSGAGSV PRLEEPQSVL SNIQRAQSHA SGGKIKKCTR TIYQSSDEYL  780
NRPGSSHSFD SSMQGQSGSL RSQDYIADSG ANESPTGFAH QPQIVLLGSD RRYNNYWLFL  840
GPCRADDPGH RRVYFESSED GHWEVIDSPQ DLLSLLSVLD IRGTREAHLL ASMKKRQSCL  900
FEGMKKHLED GCVVALTASS DSSHSETSSG NRYSPKPSSG DGASPLSDID SASVPTYLAG  960
NLQNASSAIG IGVGRRSDEK MLKWERLQAL DKWIWTSFYS SLTAVKCGKR SFKESLVHCE  1020
NCHDLYWRDE KHCRICHSTF EVGFDLEERY AIHVATCREP EDLYDVPNHK VLPSQLQALK  1080
AAIHAIEARM PTAAFTGLWM KSSHNLWVKR LRRTSSLPEL LQVLVDFVGA IDEDWLYQRS  1140
SAVSFSSYVD DITVYFQTMP QTTSAVALWV VKLDALIAPH LAQADSGRGL GKGSIQTRA

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK373981	0.0	AK373981.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3049P02.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020153547.1	0.0	homeobox-DDT domain protein RLT3-like isoform X1
TrEMBL	M7YRR0	0.0	M7YRR0_TRIUA; Uncharacterized protein
STRING	TRIUR3_27662-P1	0.0	(Triticum urartu)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4556	33	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12750.1	0.0	Homeodomain-like transcriptional regulator