PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_27498-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family Trihelix
Protein Properties Length: 513aa    MW: 57543 Da    PI: 9.0542
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_27498-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix62.41.1e-19421501186
         trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                      rW+ +e++ Li++r em+e++++ k ++ lWee+s  + ++g++r+p qCk+ w +l ++y++ k+ e++      +t++yf+ ++
  TRIUR3_27498-P1 421 RWKPEEIKSLIQLRGEMNEKFQTVKGRMVLWEEISGSLLKQGITRTPAQCKSVWTSLLQKYEESKKDEEN-----MRTWQYFSAMD 501
                      8*****************************************************************9998.....479******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF562814.46E-1420157IPR001279Metallo-beta-lactamase
PfamPF075216.7E-7100129IPR011108Zn-dependent metallo-hydrolase, RNA specificity domain
PROSITE profilePS500908.072414478IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.603.6E-6416480IPR009057Homeodomain-like
SMARTSM007170.0046418480IPR001005SANT/Myb domain
PfamPF138372.7E-16420502No hitNo description
CDDcd122031.03E-21420485No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009658Biological Processchloroplast organization
GO:0009942Biological Processlongitudinal axis specification
GO:0060918Biological Processauxin transport
GO:0009507Cellular Componentchloroplast
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 513 aa     Download sequence    Send to blast
MMMQQSGVHN FRTFLQVKAE DMDAYDPKNL LVVTTGSQAE PRAALNLASY GGSHALKLSK  60
EDVLLYSAKV IPGNESRVMK MLNRLTDLGP KIVMGKDAGL HTSGHAYHDE LEEVLQIVKP  120
QHFLPVHGEL LFLKEHELLG RSTGIKHTTV IKNGEMLGVS HLRNRKVLSN GFVSLGKQDF  180
KLMYSDGDKA FGTSTDLCID ERFRIASDGI IFVSMEIFRP KPASPQSGLK GKFKITTRCL  240
WLDNGRLLDA LYKAAHAALS SCPLNCPLSH MERMVSEILR KMVRKYSGKR PDVIVVASEN  300
TTVGFSEEVI NRHMSLVDYE KTRPENPERE AEESIPEVMR TTPDDATTSS NGESFFSPDL  360
HQPKTLDHFW ESFKSPTAVK IARIVNASAQ GNKPKLGKIS IIDKDSSTSA PAPAKSSRKN  420
RWKPEEIKSL IQLRGEMNEK FQTVKGRMVL WEEISGSLLK QGITRTPAQC KSVWTSLLQK  480
YEESKKDEEN MRTWQYFSAM DSFLSCEGEM ATK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5a0t_A3e-1915299288560RIBONUCLEASE J
5a0t_B3e-1915299288560RIBONUCLEASE J
5a0v_A3e-1915299288560RIBONUCLEASE J
5a0v_B3e-1915299288560RIBONUCLEASE J
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential protein required during embryogenesis, especially in initiating and maintaining the organization of shoot apical meristems (SAMs), cotyledons, and hypocotyls (PubMed:15266054, PubMed:25871650). Involved in auxin-mediated pathways during embryogenesis (PubMed:25871650). RNase that has both endonuclease and 5'-3' exonuclease activities. Involved in RNA surveillance to prevent overaccumulation of antisense RNA (PubMed:22033332). Probably involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay (By similarity). {ECO:0000250|UniProtKB:Q72JJ7, ECO:0000269|PubMed:15266054, ECO:0000269|PubMed:22033332, ECO:0000269|PubMed:25871650}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:25871650}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0093740.0BT009374.1 Triticum aestivum clone wlm96.pk029.g10:fis, full insert mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020191368.10.0uncharacterized protein LOC109777127
SwissprotQ84W560.0RNJ_ARATH; Ribonuclease J
TrEMBLT1NAG80.0T1NAG8_TRIUA; Uncharacterized protein
STRINGTRIUR3_27498-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP49963542
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63420.10.0Trihelix family protein
Publications ? help Back to Top
  1. Bryant N,Lloyd J,Sweeney C,Myouga F,Meinke D
    Identification of nuclear genes encoding chloroplast-localized proteins required for embryo development in Arabidopsis.
    Plant Physiol., 2011. 155(4): p. 1678-89
    [PMID:21139083]
  2. Halpert M,Liveanu V,Glaser F,Schuster G
    The Arabidopsis chloroplast RNase J displays both exo- and robust endonucleolytic activities.
    Plant Mol. Biol., 2019. 99(1-2): p. 17-29
    [PMID:30511330]