PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_27468-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 1243aa    MW: 136320 Da    PI: 5.2672
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_27468-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.30.0002511331158123
                       EEET..TTTEEESSHHHHHHHHHH.T CS
          zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt.H 23  
                       ++C+   C+++F ++ +L+ H r+ +
  TRIUR3_27468-P1 1133 FQCEidFCDMTFESRAELRAHERNiC 1158
                       89********************9877 PP
2zf-C2H210.80.001611861210123
                       EEET..TTTEEESSHHHHHHHHHHT CS
          zf-C2H2    1 ykCp..dCgksFsrksnLkrHirtH 23  
                       +kCp   Cg++F+     + Hir+H
  TRIUR3_27468-P1 1186 FKCPwdGCGMTFKWLWAQTEHIRVH 1210
                       89*********************99 PP
3zf-C2H2140.0001512161242123
                       EEET..TTTEEESSHHHHHHHHHH..T CS
          zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt..H 23  
                       y+C+  dCg++F+  s++ rH r+  H
  TRIUR3_27468-P1 1216 YECSvpDCGQTFRYVSDYSRHRRKfnH 1242
                       89999******************9777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005582.4E-4541210IPR003347JmjC domain
PROSITE profilePS5118435.86144210IPR003347JmjC domain
SuperFamilySSF511973.84E-2754206No hitNo description
PfamPF023732.1E-3674193IPR003347JmjC domain
SMARTSM003551311331155IPR015880Zinc finger, C2H2-like
SMARTSM00355511561180IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.75711561185IPR007087Zinc finger, C2H2
PROSITE patternPS00028011581180IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.0E-611621186IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576679.37E-1611671220No hitNo description
SMARTSM003552.5E-411861210IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.02711861215IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.7E-1211871210IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028011881210IPR007087Zinc finger, C2H2
SuperFamilySSF576676.19E-612111239No hitNo description
Gene3DG3DSA:3.30.160.606.0E-1112111238IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.03612161242IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.57212161243IPR007087Zinc finger, C2H2
PROSITE patternPS00028012181242IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0009826Biological Processunidimensional cell growth
GO:0032259Biological Processmethylation
GO:0033169Biological Processhistone H3-K9 demethylation
GO:0045814Biological Processnegative regulation of gene expression, epigenetic
GO:0048577Biological Processnegative regulation of short-day photoperiodism, flowering
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0008168Molecular Functionmethyltransferase activity
GO:0032452Molecular Functionhistone demethylase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1243 aa     Download sequence    Send to blast
MGAAGSTGCG SCQSNRRPHK KRRREGDPSS PDEGDKATGW KLSSSPWNLQ AIARAPGSLT  60
RFMPDDVPGV TSPMVYIGML FSWFAWHIED HELHSLNFLH TGAPKTWYAV PGDRAAELEE  120
VIRVHGYGGN PDRLASLAVL GEKTTLMSPE VIVAAGLPCC RLVQHPGEFV VTFPRAYHVG  180
FSHGFNCGEA ANFATPQWLK FAKEAAVRRA VMNYLPMLSH QQLLYLLAVS FISSIKSVPK  240
ENSSSDDIAS RAGIQPKCMS MDSKSSDAMS AAEAQKLDTD TDDDGDLPFD LSIDSGSLTC  300
VACGILGFPF MAILQPSKKA LEDMSLVDIE RFKLNCEKEN HSNAIPCSPD DSISGHPVIA  360
KRPSSPVAQS NFSHQNAESD KDGVGLDGPL LPHNNSAHSC NSENTLNPGI NTETTETKIP  420
SARFGIEFSK QTGRGDIDAQ ATESCGNTVD WNITSAFVRP RIFCLQHALE IEELLEGKGG  480
AHALIICHAD YTKLKALAIS IAEEIEFQFD CKDVPLANAS KSDLHLINIS IDDEGYKEDE  540
RDWTTQMGLN MKYFAKLRKE TPGCQEQPPL SFWKRLDISD KPSPISVVPN LKWLCRRART  600
PYRVVGYAAC RNATVGPDVV SPAVTKAEMG TSGNAYENAK EQRTAEQDAP LEPSRLQEAD  660
DVADMHTCSE DIDQDMHCLI GSKRQRTAEQ NAPLQPSRLQ EADDVVDMHT CSVDNDQDMH  720
HLIGIPVAAA EYPMTHQVCE GTVSVSTCEL DDLVSASTSD DSICSAHSQD SPGVSDDFTT  780
EQQCVQSDEL TSSVAMSAQQ FLVDGSMTAE DSSNHENLGS YNVTSECKDK QLQVQQEQEN  840
IELCNNAGRN LAAAVQVNSG HFGDKAVNLE SAIPTESQHE YPKRDAIVLE GMQAALTTVV  900
SGENRNSVNT ELDSLGILLG ALAEESILAD VPGKDEVDDA SLTLMTLASI DQSAGDVAHN  960
EVIETSSSSV GASISCKGRT LPNLASDGSL RIQNAEIQNK QENAEEVGAW NCQGLKNSRG  1020
ILDSSANSLS DTGKSSGTPK AYQPDILSRS IGSSKRTSII CYVRRKRKQK RKRESELSTS  1080
NSQSFGSFAR APCERLRPRR KPAVIEEPAE QIETAKPSAA ATKGKRSKVV ELFQCEIDFC  1140
DMTFESRAEL RAHERNICTD ESCGKRFQSH KYLKRHQCVH RDERPFKCPW DGCGMTFKWL  1200
WAQTEHIRVH TGERPYECSV PDCGQTFRYV SDYSRHRRKF NHY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ip0_A5e-5637237155359Transcription factor jumonji (Jmj) family protein
6ip4_A5e-5637237155359Arabidopsis JMJ13
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
110621069VRRKRKQK
210661073RKQKRKRE
310961100RPRRK
Functional Description ? help Back to Top
Source Description
UniProtHistone demethylase that demethylates 'Lys-4' (H3K4me) of histone H3. Involved in the control of flowering time. Has a suppressive effect on floral transition under long day conditions through the demethylation of H3K4me3 in the promoter region of the flower-promoting signal HD3B/RFT1. {ECO:0000269|PubMed:24759811}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020157215.10.0lysine-specific demethylase SE14
SwissprotQ10RP40.0SE14_ORYSJ; Lysine-specific demethylase SE14
TrEMBLM7ZI030.0M7ZI03_TRIUA; Lysine-specific demethylase lid
STRINGTRIUR3_27468-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP99393437
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04240.11e-108C2H2 family protein