![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | TRIUR3_27421-P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 111aa MW: 12240.2 Da PI: 7.7573 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 130.3 | 8.4e-41 | 6 | 92 | 1 | 87 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 +Ca+Ck+lrr+C+kdC++ap fpa++p+kfa+vhk+FGasnv+k+l +lp ++r da+sslvyeA+ar+rdPvyG+vg i+ lq+q+ TRIUR3_27421-P1 6 PCASCKLLRRRCTKDCIFAPFFPADDPHKFAIVHKVFGASNVSKMLLELPVQQRGDAVSSLVYEANARVRDPVYGCVGAISFLQNQV 92 7************************************************************************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.641 | 5 | 106 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 4.2E-40 | 6 | 92 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 111 aa Download sequence Send to blast |
MAGGSPCASC KLLRRRCTKD CIFAPFFPAD DPHKFAIVHK VFGASNVSKM LLELPVQQRG 60 DAVSSLVYEA NARVRDPVYG CVGAISFLQN QVFDPELVRD PCFSDHCHVL I |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-42 | 2 | 92 | 7 | 97 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-42 | 2 | 92 | 7 | 97 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC134928 | 5e-61 | AC134928.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone B1164G01, complete sequence. | |||
GenBank | AP014961 | 5e-61 | AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012613 | 5e-61 | CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020146571.1 | 6e-62 | LOB domain-containing protein 12 | ||||
Swissprot | Q8LBW3 | 2e-54 | LBD12_ARATH; LOB domain-containing protein 12 | ||||
TrEMBL | A0A446J069 | 5e-76 | A0A446J069_TRITD; Uncharacterized protein | ||||
TrEMBL | M7YGE7 | 5e-76 | M7YGE7_TRIUA; Uncharacterized protein | ||||
TrEMBL | M8BKD5 | 5e-76 | M8BKD5_AEGTA; Uncharacterized protein | ||||
STRING | EMT25455 | 9e-77 | (Aegilops tauschii) | ||||
STRING | TRIUR3_27421-P1 | 9e-77 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP882 | 38 | 150 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G30130.1 | 9e-57 | LBD family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|