PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_27148-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 278aa    MW: 29373.1 Da    PI: 5.1626
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_27148-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.78.6e-13117163455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       h ++Er+RR++iN++f eL  l+P +     kK++K +iL  A+ ++k+Lq
  TRIUR3_27148-P1 117 DHIMAERKRRENINQSFIELSALIPGL-----KKMDKGTILADATIFVKELQ 163
                      699************************.....9*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.227113162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.32E-15117172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-10117163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-16117171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.14E-14118167No hitNo description
SMARTSM003531.0E-11119168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MDDSRLFMQW AVSTLEQQDP GGADGGSEKS AGFPCLQALR DSSELTEAQN SLSSGDDTSG  60
GGGIITPAPD SAVHQGSWSM SSPTSGGPFA PPGISSTGTG TSNAPRASTK STPYAQDHIM  120
AERKRRENIN QSFIELSALI PGLKKMDKGT ILADATIFVK ELQERVKYLE AAGGNHRSVE  180
TVVLVRKLCR PVAPDVGESS ARFLLAAGTP AIGNQLPEIE AKLSGDNVMV RIHCETNGKG  240
LVSRVLAEVE ELHLRIIHND VMPFTASTVI ITTMAEAS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1121126ERKRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3659959e-37AK365995.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2039J24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020170214.11e-158transcription factor NAI1-like
TrEMBLT1N9I50.0T1N9I5_TRIUA; Uncharacterized protein
STRINGTRIUR3_27148-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92731143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22760.13e-33bHLH family protein