PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_27063-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family M-type_MADS
Protein Properties Length: 328aa    MW: 36114.2 Da    PI: 8.4266
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_27063-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF38.71.3e-121351543
                     SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
           SRF-TF  5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                     +k  r  t  kRr+g+ KKAeEL ++C+a+++v+++++ 
  TRIUR3_27063-P1 13 DKKSRCSTSKKRREGLRKKAEELAIMCNAKACVLVYGEG 51
                     6777888889***************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.6E-14160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.343150IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.26E-17179IPR002100Transcription factor, MADS-box
CDDcd002664.81E-21285No hitNo description
PRINTSPR004048.2E-7323IPR002100Transcription factor, MADS-box
PfamPF003191.4E-121151IPR002100Transcription factor, MADS-box
PRINTSPR004048.2E-72338IPR002100Transcription factor, MADS-box
PRINTSPR004048.2E-73859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MARKKVALRY ILDKKSRCST SKKRREGLRK KAEELAIMCN AKACVLVYGE GEAVPQVFPS  60
PAEAVPVLNR YMNMPEGNFK KTVNHASFLN QHFGKLQAKG HKLQDVCEDN ETRILLHKVM  120
LRSNLSSLDG LNIEDLTNVG RKLEVILQSM GESITKISGQ PPVFQSQEPY VTNTMGMGSP  180
AMLYKRKDSR APPPAPYVTN YMHVESSSTY QAPPAPYITH NMDMGSSMMY PTASPAPYVT  240
SGMDMGPSTM FKALPQQQED SLDMMRYGGD LNALVYSGYN SSGCNDTSTS TVFPSGDIDP  300
KRSFEVGFGW QFGGADPEAS SSSPFLPM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVALRYILDKKSRCSTSKKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020184638.10.0uncharacterized protein LOC109770348
TrEMBLM7YKX00.0M7YKX0_TRIUA; MADS-box transcription factor PHERES 2
STRINGTRIUR3_27063-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36336202
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28700.18e-17AGAMOUS-like 46