PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_26567-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 482aa    MW: 53920.3 Da    PI: 8.3743
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_26567-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3421.6e-133761897
                     --HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
               B3 18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97
                     +p++   +h + ++ s t++l +++gr+++v +  +   g+ vl++GW  Fv a++++e+D+++F ++g+s+f   +++f
  TRIUR3_26567-P1  3 IPRELS-TH-LRSRISDTIKLDTPNGRTYDVVV--TWEFGELVLRSGWDAFVTAHHIEENDTFLFIYHGNSNF--EIHIF 76
                     666665.44.2345788****************..556667****************************9999..66666 PP
2B338.52e-12165250998
                      HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
               B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                       + k + + +p + + +h +++++s  ++le + g+ ++v+   +k+s+  +vl++ W  Fv an+++ +D ++F+   + +++l+v +++
  TRIUR3_26567-P1 165 VNVKDCSINIPLRLV-SHLKEEAGSAIIKLEAPGGNIYNVRA--SKHSEDqVVLQSDWDAFVAANHIQLNDLLIFHS--KGKTRLKVLALD 250
                      46678999******9.776678999*****************..7777777*************************3..356666776665 PP
3B337.34.8e-124004701890
                      --HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
               B3  18 lpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                      ++ +f++e+   + + +++tl+   ++ + W  +l    k++r ++ +GW++F+ +n+L+ gD+++Fk+ +r+++
  TRIUR3_26567-P1 400 FSLEFCAEYasTL-PSRDQTLI-LELEDKDWHTTL--HIKGSRKIIYRGWSKFACDNNLQLGDICLFKMAERRTR 470
                      4578999997533.34555666.556889******..66666678999********************8755333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.281179IPR003340B3 DNA binding domain
SMARTSM010190.061179IPR003340B3 DNA binding domain
SuperFamilySSF1019365.3E-16281IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.9E-15281IPR015300DNA-binding pseudobarrel domain
CDDcd100174.93E-14277No hitNo description
PfamPF023622.5E-11377IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.5E-16147262IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.18E-15150254IPR015300DNA-binding pseudobarrel domain
CDDcd100172.50E-14154250No hitNo description
PROSITE profilePS508639.502157252IPR003340B3 DNA binding domain
SMARTSM010190.0015159252IPR003340B3 DNA binding domain
PfamPF023628.8E-10165248IPR003340B3 DNA binding domain
SuperFamilySSF1019363.14E-15379481IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.1E-15379481IPR015300DNA-binding pseudobarrel domain
CDDcd100171.98E-13384480No hitNo description
SMARTSM010190.0022386482IPR003340B3 DNA binding domain
PfamPF023624.1E-10395472IPR003340B3 DNA binding domain
PROSITE profilePS5086310.095420482IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
QRIPRELSTH LRSRISDTIK LDTPNGRTYD VVVTWEFGEL VLRSGWDAFV TAHHIEENDT  60
FLFIYHGNSN FEIHIFNSRG CEKMASCFQP PSEIFGAFPP SEPCDHHVLN AAPNPRHVQT  120
QVEFDYTMST GCYLTKSQDE KVVEIARKIR SEIPLYVAIM KKLNVNVKDC SINIPLRLVS  180
HLKEEAGSAI IKLEAPGGNI YNVRASKHSE DQVVLQSDWD AFVAANHIQL NDLLIFHSKG  240
KTRLKVLALD PSGCEKNSSC FTQKKSKTGE GSVQITDARP CTVEIIDLTS SDDDHTERED  300
AGRSSGRRKQ VPGSHAKARK MASASSPSTK SGSDTHKLKH PISNNDNLQG PSRPPYILAR  360
GVTLTGRVEK KVQEKVQAIG SELPIYVAVM TKSCVGGNLF SLEFCAEYAS TLPSRDQTLI  420
LELEDKDWHT TLHIKGSRKI IYRGWSKFAC DNNLQLGDIC LFKMAERRTR GLAMRVHFIC  480
KS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002439346.11e-139B3 domain-containing protein LOC_Os12g40080
TrEMBLT1N7X90.0T1N7X9_TRIUA; Uncharacterized protein
STRINGTRIUR3_26567-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16378713
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.17e-18B3 family protein