PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIUR3_26472-P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MYB_related | ||||||||
Protein Properties | Length: 274aa MW: 29817.8 Da PI: 4.8716 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 28.7 | 3.1e-09 | 39 | 65 | 20 | 47 |
TTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 20 GggtWktIartmgkgRtlkqcksrwqky 47 + +W+tIa ++ gRt++++k++w+++ TRIUR3_26472-P1 39 KMQRWATIATHLE-GRTDNEIKNYWNTH 65 4558*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 8.7E-13 | 35 | 82 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.59E-6 | 36 | 66 | No hit | No description |
Pfam | PF00249 | 7.3E-7 | 37 | 65 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.43E-8 | 38 | 74 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 6.365 | 42 | 66 | IPR017877 | Myb-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 274 aa Download sequence Send to blast |
MGVGGSIDGR LRKRFTLVFV CVGLSYTNCS MMTTTEEWKM QRWATIATHL EGRTDNEIKN 60 YWNTHIRKKL MRMGVDPVTH QQLPPDHHLD GTSASLMPEG LLWAAVAASL AGLDTGALRQ 120 AQLLQQLLQS IGSNNDATNL IANLAAANSV LNSSSSVVPS HLLQDQLNML SGANCMQPGY 180 LCNTSNFTGQ DVVQRQLIND MSPGTSSFAA AEPADHLCNT TAAFASHDVA PAVDMLPVQE 240 LAGLMEPMEL QLPNLCSLES DSFWKELLDD GYRL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF470090 | 3e-49 | AF470090.1 Zea mays P-type R2R3 Myb protein (Myb49) gene, complete cds. | |||
GenBank | AM156904 | 3e-49 | AM156904.1 Zea mays mRNA for transcription factor MYB2 (myb2 gene). | |||
GenBank | BT034484 | 3e-49 | BT034484.1 Zea mays full-length cDNA clone ZM_BFc0173K04 mRNA, complete cds. | |||
GenBank | BT054398 | 3e-49 | BT054398.1 Zea mays full-length cDNA clone ZM_BFc0030L21 mRNA, complete cds. | |||
GenBank | HQ858691 | 3e-49 | HQ858691.1 Zea mays clone UT1147 ZmMYB2 transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020169249.1 | 1e-128 | transcription factor MYB39-like | ||||
Refseq | XP_020198492.1 | 1e-128 | transcription factor MYB39-like | ||||
TrEMBL | M7ZVB3 | 0.0 | M7ZVB3_TRIUA; Transcription factor MYB39 | ||||
STRING | TRIUR3_26472-P1 | 0.0 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6265 | 29 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34670.1 | 7e-18 | myb domain protein 93 |