PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_26093-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family HB-other
Protein Properties Length: 336aa    MW: 37357.8 Da    PI: 6.012
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_26093-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox20.67.7e-0747663857
                     TS-HHHHHHHHHHHHHHHHC CS
         Homeobox 38 gLterqVkvWFqNrRakekk 57
                      ++ +qV +WFqNrR+ +k+
  TRIUR3_26093-P1 47 PVQYSQVHTWFQNRRYTQKR 66
                     67889************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500719.183167IPR001356Homeobox domain
SuperFamilySSF466892.65E-7268IPR009057Homeodomain-like
PfamPF000462.4E-44766IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.607.4E-54867IPR009057Homeodomain-like
CDDcd000860.002184867No hitNo description
PfamPF167198.0E-33114240IPR032001SAWADEE domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
IRFTHAEVAK MLEVLRDLNA MPKRPIIQGL TDDFNASPDR SGDGQVPVQY SQVHTWFQNR  60
RYTQKRRGER PPAQGKMLPT GAEAQHPASY RVQSSCPSNS ESQSGNASSD CGLVQLEAKS  120
PTNGAWFDVA AILSYRFSET GDQEIQVWFS GFGAEEEEWI NVCKSVRLRS LPCIDTECVG  180
VLPGDLILCY QERKEQALYF DAHVLEVERR THDLRGCRCS FLVRYDHDHS EEMVPLRKVC  240
RRPSADVKID IVIDDSLAEP KAQKSHKRMD TNPDEVTVVP GPPNQGGRSN KLAAPLLITP  300
DSTHRDSVAD EQIGDIEAAS KGEATSKAHG DKMNVG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4iuq_A7e-401142434133SAWADEE HOMEODOMAIN HOMOLOG 1
4iuq_B7e-401142434133SAWADEE HOMEODOMAIN HOMOLOG 1
4iur_A7e-401142434133SHH1 SAWADEE
4iur_B7e-401142434133SHH1 SAWADEE
4iut_A7e-401142434133SAWADEE HOMEODOMAIN HOMOLOG 1
4iut_B7e-401142434133SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_A7e-401142434133SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_B7e-401142434133SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_A7e-401142434133SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_B7e-401142434133SAWADEE HOMEODOMAIN HOMOLOG 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020157952.11e-131protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X1
RefseqXP_020157953.11e-131protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X1
SwissprotQ8RWJ71e-78SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2
TrEMBLT1N6M80.0T1N6M8_TRIUA; Uncharacterized protein
STRINGTRIUR3_26093-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP41902948
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.19e-76sequence-specific DNA binding transcription factors;sequence-specific DNA binding