PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_25879-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family GRAS
Protein Properties Length: 524aa    MW: 58027.6 Da    PI: 5.9388
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_25879-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS418.65.5e-1281545231373
             GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                      l++++++c +av+++d+ +++ l+++l +l+s +gdpmqRl ay++e+L arl+ s+s+lyk+l+++e +    se +++++l+ e++P++kf+
  TRIUR3_25879-P1 154 LKQVIIACGKAVAANDMYATELLISELGQLVSVSGDPMQRLGAYMLEGLVARLSFSGSKLYKSLKCKEPT---GSELMSYMHLLCEICPFYKFG 244
                      57899****************************************************************9...9******************** PP

             GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrl 186
                      ++ aN aI ea++ge+ +HiiDf+i qG QW++++qaLa+Rp+gpp lRiTg+++++s   +   l  +g +L+++ +++g+pfefn+ v  + 
  TRIUR3_25879-P1 245 YMSANGAIAEAIKGENFIHIIDFQIAQGSQWITIIQALAARPGGPPFLRITGIDDSNSAyaRGGGLDMVGTKLHSVSASCGLPFEFNA-VRAAS 337
                      *******************************************************988899999************************.68899 PP

             GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280
                      +++ +++L+++pgEa++Vn+++qlh+++desvs+e++rd++ +++kslsP+vv++veqe+++n++ Fl r le+l+yy+a+f+s+++ lpr+++
  TRIUR3_25879-P1 338 HEVYIQHLDIRPGEAIVVNFAYQLHHTPDESVSVENHRDRIARMIKSLSPRVVTLVEQESNTNTSAFLPRYLETLDYYTAMFESIDVALPRDDK 431
                      9********************************************************************************************* PP

             GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                       ri+ E+++++r+ivn++acegaer+erhe ++kW++r+ +aGF+p+pls+ +++++k+ll  ++s  yr+ee++g l+lgWk+r Lv+ SaW
  TRIUR3_25879-P1 432 RRISTEQHCVARDIVNLIACEGAERVERHEVFGKWKARFAMAGFRPYPLSSVVNNTIKTLLDSYHSC-YRLEERDGVLYLGWKSRVLVVSSAW 523
                      *****************************************************************55.************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098566.469128505IPR005202Transcription factor GRAS
PfamPF035141.9E-125154523IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009640Biological Processphotomorphogenesis
GO:0005737Cellular Componentcytoplasm
GO:0004871Molecular Functionsignal transducer activity
Sequence ? help Back to Top
Protein Sequence    Length: 524 aa     Download sequence    Send to blast
MAYYNNSVPL AENGRFYMMQ NHLDVHYTSS GDGSQKISSN PQVFEAQYCT LESSSANGVY  60
PTQSSTSSHS ISPISGSPLS QNDSHSYHTY DSPPTASCVT EIPDFQSKLK ELENAILGPE  120
LDIASDSPES LLQANHPLRQ DNWRQLLGID TGDLKQVIIA CGKAVAANDM YATELLISEL  180
GQLVSVSGDP MQRLGAYMLE GLVARLSFSG SKLYKSLKCK EPTGSELMSY MHLLCEICPF  240
YKFGYMSANG AIAEAIKGEN FIHIIDFQIA QGSQWITIIQ ALAARPGGPP FLRITGIDDS  300
NSAYARGGGL DMVGTKLHSV SASCGLPFEF NAVRAASHEV YIQHLDIRPG EAIVVNFAYQ  360
LHHTPDESVS VENHRDRIAR MIKSLSPRVV TLVEQESNTN TSAFLPRYLE TLDYYTAMFE  420
SIDVALPRDD KRRISTEQHC VARDIVNLIA CEGAERVERH EVFGKWKARF AMAGFRPYPL  480
SSVVNNTIKT LLDSYHSCYR LEERDGVLYL GWKSRVLVVS SAWC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-581565236374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2525670.0AK252567.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf156f06, mRNA sequence.
GenBankAK3609130.0AK360913.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1128D13.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020180371.10.0scarecrow-like protein 21
RefseqXP_020180372.10.0scarecrow-like protein 21
RefseqXP_020180373.10.0scarecrow-like protein 21
SwissprotQ8GVE10.0CIGR2_ORYSJ; Chitin-inducible gibberellin-responsive protein 2
TrEMBLM7ZFA10.0M7ZFA1_TRIUA; Uncharacterized protein
STRINGTRIUR3_25879-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP151337117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]
  3. Tanabe S, et al.
    The elicitor-responsive gene for a GRAS family protein, CIGR2, suppresses cell death in rice inoculated with rice blast fungus via activation of a heat shock transcription factor, OsHsf23.
    Biosci. Biotechnol. Biochem., 2016. 80(1): p. 145-51
    [PMID:26287768]