PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_25737-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 337aa    MW: 38781.9 Da    PI: 8.8625
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_25737-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.45.5e-1823111599
                      -..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
               B3   5 ltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                      +t+ d ++++ +v+p +f+ ++   k   s t+ le ++g++++v +  + ++++++l++GW+ Fv+an++ e+D+++F++ g+ +f  +v vf
  TRIUR3_25737-P1  23 FTHMDRHSRHSMVIPERFV-NYfAWK--LSGTIELEAPNGNVYDVGI--TERRNKTLLRSGWEAFVDANHIVENDSLMFRYRGSCRF--KVVVF 109
                      466799999**********.553433..5669***************..999999**************************998888..88877 PP

                      -S CS
               B3  98 rk 99 
                      ++
  TRIUR3_25737-P1 110 DS 111
                      75 PP
2B342.71e-132433351099
                      HHHTT-EE--HHH.HTT...---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE..EEEEE CS
               B3  10 vlksgrlvlpkkfaeeh...ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefelvvkvf 97 
                      v++++++ ++ +fa+++       ++s+ l+l+   ++++W  +l    ++++  + +GW +F+++n+L+e+D+++F+l+ ++ ++++++v ++
  TRIUR3_25737-P1 243 VMTRRIVLVSLTFATQYsetY-LRKGSRSLVLQAeGKSQRWHTEL--HDTKRTLRICRGWTSFARDNNLRERDICLFELMkNEgEQKKMMVYII 333
                      566667778888998888852.3346778999984566*******..99999999***********************9955589999999999 PP

                      -S CS
               B3  98 rk 99 
                      r+
  TRIUR3_25737-P1 334 RR 335
                      97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.34E-2116114IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.5E-2019114IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.99919112IPR003340B3 DNA binding domain
CDDcd100172.75E-1920110No hitNo description
SMARTSM010191.7E-1023112IPR003340B3 DNA binding domain
PfamPF023621.8E-1623110IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.6E-16234335IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-15234335IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.617234336IPR003340B3 DNA binding domain
CDDcd100171.49E-11238334No hitNo description
SMARTSM010190.0035240336IPR003340B3 DNA binding domain
PfamPF023624.3E-11250335IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MSNSCECCKR YWTHLHGKVK CFFTHMDRHS RHSMVIPERF VNYFAWKLSG TIELEAPNGN  60
VYDVGITERR NKTLLRSGWE AFVDANHIVE NDSLMFRYRG SCRFKVVVFD SSGCEKVVSC  120
ARILTNISDQ EPSTNSADIS TSFSDGNTPS SARARSDDCQ SGSSGHRRKR AKKDVISYPS  180
EGSSDEHKSS ESEDIEHIRL TPEHDDTDPC MMPMGTRLTQ VQEKKVLKKV GAIASDLHIY  240
VAVMTRRIVL VSLTFATQYS ETYLRKGSRS LVLQAEGKSQ RWHTELHDTK RTLRICRGWT  300
SFARDNNLRE RDICLFELMK NEGEQKKMMV YIIRRER
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1166173RRKRAKKD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020158256.11e-175B3 domain-containing protein Os03g0619600-like
TrEMBLT1N5N70.0T1N5N7_TRIUA; Uncharacterized protein
STRINGTRIUR3_25737-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58531172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.12e-23B3 family protein