PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_24689-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C3H
Protein Properties Length: 198aa    MW: 21150.6 Da    PI: 4.4426
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_24689-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.72.6e-1098120426
                      ---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                      + C +++++GtC++G +CkF+H+
  TRIUR3_24689-P1  98 PDCTYYLKFGTCRFGMKCKFNHP 120
                      89********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.22594122IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-597122IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-798120IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MADADAKAPP KSNLDADLIA SISPSSNSSG ARNAVAIESQ FADLAISDEL PKPSGWGDDA  60
VLGIAGSDEI TGEITGGKVQ PVATADSRPR FPQRHAEPDC TYYLKFGTCR FGMKCKFNHP  120
ARKKKNRVKA SGSSSSGSND ISNKAFPPDD DQVVEEISFE TVEVVGWSKG CLMDYILELI  180
LVDINIVDDV GNADQIEK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3705170.0AK370517.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2111P01.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020179364.14e-89zinc finger CCCH domain-containing protein 65-like isoform X1
RefseqXP_020179365.14e-89zinc finger CCCH domain-containing protein 65-like isoform X2
SwissprotQ2QTY22e-36C3H65_ORYSJ; Zinc finger CCCH domain-containing protein 65
TrEMBLM7ZGS81e-143M7ZGS8_TRIUA; Zinc finger CCCH domain-containing protein 65
STRINGTRIUR3_24689-P11e-144(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79283548
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.12e-11zinc finger protein 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]