PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIUR3_24602-P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | WRKY | ||||||||
Protein Properties | Length: 205aa MW: 22617.3 Da PI: 6.1069 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 85.4 | 5.1e-27 | 25 | 84 | 2 | 58 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 dDgy+WrKYGqK++ gs++prsYYrCt++ gC +kkkv+r ++dp + e+tY g+H + TRIUR3_24602-P1 25 DDGYTWRKYGQKDILGSRYPRSYYRCTHKnyyGCDAKKKVQRLDDDPFIYEVTYCGDHSC 84 8***************************99999*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.4E-27 | 17 | 84 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 8.63E-25 | 21 | 84 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.7E-36 | 24 | 86 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.8E-25 | 25 | 84 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 21.654 | 25 | 83 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 205 aa Download sequence Send to blast |
RRESGKREMV LVPAQRTGNT ELPPDDGYTW RKYGQKDILG SRYPRSYYRC THKNYYGCDA 60 KKKVQRLDDD PFIYEVTYCG DHSCLTSTTP LLTLPTASTT ISAANSSTVA TGSDLPTRDL 120 PMELVEQTHS AALSTPVKLG ISWMPASFQG ILAGSGTGMG NIANMKMNVS TAPRDTDYPT 180 LDLADVTFNF GSSMDDIFSS YDRHD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 5e-20 | 25 | 84 | 9 | 68 | OsWRKY45 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00304 | DAP | Transfer from AT2G40740 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020198551.1 | 1e-134 | uncharacterized protein LOC109784377 | ||||
TrEMBL | T1N2K6 | 1e-151 | T1N2K6_TRIUA; Uncharacterized protein | ||||
STRING | TRIUR3_24602-P1 | 1e-152 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9796 | 33 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40740.1 | 2e-40 | WRKY DNA-binding protein 55 |