PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIUR3_24476-P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | HSF | ||||||||
Protein Properties | Length: 178aa MW: 19532.2 Da PI: 4.7549 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 80.4 | 2.7e-25 | 13 | 71 | 2 | 60 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHT CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmY 60 Fl+k+y +++d+e++++isw+e+g++fvv+ + ef++++Lpk FkhsnfaSFvRQLn+Y TRIUR3_24476-P1 13 FLTKTYAMVDDPETDDTISWNESGTAFVVWRRAEFERDLLPKNFKHSNFASFVRQLNTY 71 9********************************************************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 6.4E-27 | 9 | 77 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 4.1E-25 | 9 | 139 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 2.58E-22 | 11 | 71 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 3.0E-21 | 13 | 71 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.2E-14 | 13 | 36 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.2E-14 | 51 | 63 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.2E-14 | 64 | 76 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 178 aa Download sequence Send to blast |
MASPALGAGT PPFLTKTYAM VDDPETDDTI SWNESGTAFV VWRRAEFERD LLPKNFKHSN 60 FASFVRQLNT YVRSVSAHPP LSGWFGAKPM LFGVAIGSKR SREDGHGGGD EGNGAEEDGE 120 DDEEEQEHDE DDERHAARRE QGKAMRTERS DLNVLSLSVR AAAAARPDGG SRDRSGNH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1hks_A | 8e-19 | 7 | 71 | 1 | 65 | HEAT-SHOCK TRANSCRIPTION FACTOR |
1hkt_A | 8e-19 | 7 | 71 | 1 | 65 | HEAT-SHOCK TRANSCRIPTION FACTOR |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU953624 | 1e-132 | EU953624.1 Zea mays clone 1440437 heat shock factor protein 4 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020152813.1 | 8e-45 | heat stress transcription factor B-2a-like | ||||
TrEMBL | M7YIA6 | 1e-127 | M7YIA6_TRIUA; Heat stress transcription factor B-2a | ||||
STRING | TRIUR3_24476-P1 | 1e-128 | (Triticum urartu) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36990.1 | 3e-28 | heat shock factor 4 |