PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_24313-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 360aa    MW: 40316.2 Da    PI: 10.2684
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_24313-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3672.8e-2119118199
                      EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                      ffkvl     +k+ rl +p kf++++        +g ke s+  tle +sgr+W+v +  r++ +++++t+GW +Fv+++ L+e +f+vF++dg
  TRIUR3_24313-P1  19 FFKVL--IGDFKK-RLKIPPKFCKHIpweasrkaKGLKEASMAATLEGPSGRTWQVVI--RRTAEGTFFTAGWAKFVQDQALRELEFLVFRHDG 107
                      66666..555555.6********888********6666799*****************..*******************************998 PP

                      SSEE..EEEEE-S CS
               B3  87 rsefelvvkvfrk 99 
                       ++f    +vf+k
  TRIUR3_24313-P1 108 GTSF--AAMVFDK 118
                      7777..7777766 PP
2B351.32.1e-16260346598
                      -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
               B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                      +++ +v  s ++++p  f ++h   ++e+++++l+d+ g+ W   +i   + +   l++GW  F++ n L+egD +vF+l+g  ef  +v+vfr
  TRIUR3_24313-P1 260 MSTMHVYYSFMMRFPTGFSRQHL--PREKTEMVLRDPGGKAWAALYI--PSTRD-RLSRGWCAFARGNCLEEGDCCVFELVGAAEF--RVHVFR 346
                      6788999999*********9995..345679***************4..44333.49***********************997777..999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.9E-2113121IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.9E-2015123IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.71716119IPR003340B3 DNA binding domain
CDDcd100171.51E-1817117No hitNo description
PfamPF023622.6E-1819117IPR003340B3 DNA binding domain
SMARTSM010193.3E-1119119IPR003340B3 DNA binding domain
SuperFamilySSF1019365.3E-22252346IPR015300DNA-binding pseudobarrel domain
CDDcd100172.97E-22254346No hitNo description
Gene3DG3DSA:2.40.330.103.0E-20255346IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.1E-9256348IPR003340B3 DNA binding domain
PROSITE profilePS5086313.521256348IPR003340B3 DNA binding domain
PfamPF023623.7E-15258346IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MPDAERQSPL ASAERRPHFF KVLIGDFKKR LKIPPKFCKH IPWEASRKAK GLKEASMAAT  60
LEGPSGRTWQ VVIRRTAEGT FFTAGWAKFV QDQALRELEF LVFRHDGGTS FAAMVFDKSA  120
CEREDLLLAG DAPRPRRKRG RPRTASRALD ESTGMELVPY RAPADRPPQA ACSDRMPESD  180
KSNGTCSLCF SSFYIAFRFG FSDAMAMCSV QHNACSCRIS RASRPYEGRG GRRRAPAVLD  240
RRPTVGVGGX SSPPDCVIRM STMHVYYSFM MRFPTGFSRQ HLPREKTEMV LRDPGGKAWA  300
ALYIPSTRDR LSRGWCAFAR GNCLEEGDCC VFELVGAAEF RVHVFRVVEP AVPAVRLRLA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1133137RPRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020157089.10.0B3 domain-containing protein Os01g0723500-like
SwissprotQ8S2E61e-146Y1235_ORYSJ; B3 domain-containing protein Os01g0723500
TrEMBLT1N1T40.0T1N1T4_TRIUA; Uncharacterized protein
STRINGTRIUR3_24313-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP127923135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31640.15e-14B3 family protein