PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_24252-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 267aa    MW: 29949.3 Da    PI: 8.146
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_24252-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B337.44.6e-1218773599
                     EEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
               B3 35 tltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                      ++le ++g+ ++vk+    k g ++lt+GW++Fv+an++++gD ++F + g+s+f  +v+++++
  TRIUR3_24252-P1 18 PIKLEAPDGQMYSVKF---VKFGLITLTTGWRRFVNANRIRQGDPILFVYCGSSTF--KVHICSS 77
                     49999***********...5566799*************************98999..9999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.746178IPR003340B3 DNA binding domain
SMARTSM010190.0044278IPR003340B3 DNA binding domain
SuperFamilySSF1019363.73E-13976IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.0E-121489IPR015300DNA-binding pseudobarrel domain
CDDcd100173.96E-111676No hitNo description
PfamPF023621.2E-91777IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.0E-11139250IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.16E-9144249IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.15149245IPR003340B3 DNA binding domain
PROSITE profilePS508636.668149245IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
IPWEVRRQLR NVITDGEPIK LEAPDGQMYS VKFVKFGLIT LTTGWRRFVN ANRIRQGDPI  60
LFVYCGSSTF KVHICSSSSH KNSLPCSQQP PNILRAVPPH DRHVLNEQMV PGPAHVGYTI  120
SLGTWLTKEQ KKKVLELADS SMRSEIPLHV AAMIKRNANE DCYVYIPLRL LDNFKEGVTE  180
AAIQLEAHGN DMVYSVGTSK HSDDQVILQS GLSHFVASLR IQDNDLLVFR NKWKDRLEVL  240
VLDPSGCEKT CFAMGNSSNA QEMASTS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020163991.11e-103B3 domain-containing protein Os03g0620400-like
TrEMBLT1N1M50.0T1N1M5_TRIUA; Uncharacterized protein
STRINGTRIUR3_24252-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP4189123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57720.14e-07B3 family protein