PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_24233-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bZIP
Protein Properties Length: 337aa    MW: 35424.3 Da    PI: 5.7962
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_24233-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_139.31.4e-12153200956
                      CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   9 rkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkev 56 
                      rkq+NRe+ArrsR RK a + eLe  v +L  eN++L  +l   ++++
  TRIUR3_24233-P1 153 RKQSNRESARRSRSRKAAHLNELEAQVSQLRVENSSLLRRLADVNQKY 200
                      9************************************99998877766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.5E-15139209IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.19E-9153199No hitNo description
Gene3DG3DSA:1.20.5.1702.7E-9153200No hitNo description
PROSITE profilePS5021710.243153201IPR004827Basic-leucine zipper domain
PfamPF001702.6E-10153199IPR004827Basic-leucine zipper domain
PfamPF124985.1E-45216330IPR020983Basic leucine-zipper, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MAGASGGGAA QVKQTAAAAA SGAVVDPVEY NAMLKQKLEK DLAAVAMWRA SGAMPPERFA  60
ANPSLPNADV QHIGTINPIG GNVVPVQNKL AGGASGVLGP QLVQNADALV KQAASSSSRE  120
QSEDDDMEGE DEITGNGAPT DQRLRRSFLT GSRKQSNRES ARRSRSRKAA HLNELEAQVS  180
QLRVENSSLL RRLADVNQKY NGAAVDNRVL KADVETLRAK VKMAEDSVKR VTGMSALFPA  240
GSDMSSLSMP FTGSPSEATS DAAVPDDLSA YFSTSEAGGN NRYMPEMASS AQEDDNFLNE  300
AMDTGKMGRP DSLHRVASLE HLQKRMCGGP ASSGSTS
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds to the DNA specific sequence 5'-GCCACGT[AC]AG-3' found in the alpha-globulin gene promoter (PubMed:9049271, PubMed:11572990). Does not bind to promoters of other major storage genes such as glutelin, prolamin and albumin (PubMed:9049271). Binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters (PubMed:11133985). {ECO:0000269|PubMed:11133985, ECO:0000269|PubMed:11572990, ECO:0000269|PubMed:9049271}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3657870.0AK365787.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2037L16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020172895.10.0light-inducible protein CPRF2-like
SwissprotQ7X9A81e-152RSBZ2_ORYSJ; bZIP transcription factor RISBZ2
TrEMBLM7ZRQ90.0M7ZRQ9_TRIUA; Regulatory protein opaque-2
STRINGTRIUR3_24233-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34883878
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28770.19e-34bZIP family protein
Publications ? help Back to Top
  1. Onodera Y,Suzuki A,Wu CY,Washida H,Takaiwa F
    A rice functional transcriptional activator, RISBZ1, responsible for endosperm-specific expression of storage protein genes through GCN4 motif.
    J. Biol. Chem., 2001. 276(17): p. 14139-52
    [PMID:11133985]
  2. Yang D,Wu L,Hwang YS,Chen L,Huang N
    Expression of the REB transcriptional activator in rice grains improves the yield of recombinant proteins whose genes are controlled by a Reb-responsive promoter.
    Proc. Natl. Acad. Sci. U.S.A., 2001. 98(20): p. 11438-43
    [PMID:11572990]
  3. Cheng S,Wang Z,Hong M
    Rice bZIP protein, REB, interacts with GCN4 motif in promoter of Waxy gene.
    Sci. China, C, Life Sci., 2002. 45(4): p. 352-60
    [PMID:18759022]