PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIUR3_23165-P1

Organism

Triticum urartu

Taxonomic ID

4572

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

GRAS

Protein Properties

Length: 794aa MW: 88405.3 Da PI: 6.3489

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIUR3_23165-P1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	373.9	2.1e-114	419	788	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 ++lL++cA+ vs +d + a+ lL++++++as +gd qRla++f+++L+arla+++s++yk + s+ + +++l+a++l+ ++P+ k+sh TRIUR3_23165-P1 419 ETLLIHCAQSVSIDDRRSATDLLKQIRQHASATGDGDQRLAHCFANGLEARLAGNGSQIYKLHTISRFA---CTDVLKAYQLYLAACPFKKISH 509 789********************************************************99999999...9***************** PP GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrle 187 aNq+I++ave++++vHi+Df++ +G+QWp+L+q L++R +gpp+lRiT+++ p++g +e++ee+g+ L+++A++++vpf+++ +a+++e TRIUR3_23165-P1 510 YFANQTIMNAVEKAKKVHIVDFGVYYGFQWPCLIQRLSKRLGGPPELRITAIDTPQPGfrPAERIEEIGRYLSDYAQTFKVPFKYHG-IASQFE 602 ***********************************************************************************.7* PP GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpresee 281 ++++e+L+++++E l+Vn++++ ++l+desv es+r+ vL+++++++P+v+++ + ++n++ F+ rf eal +sa fd+lea++pr++ee TRIUR3_23165-P1 603 AVRVEDLHIEKDEILIVNSMFRFKTLMDESVVAESPRNMVLNTIRKMKPHVFIHGVTNGSYNAPFFVSRFREALFQFSAHFDMLEANIPRDNEE 696 ****************************************************************************************** PP GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 r +E +++re+ nv++ceg er er et+++W+ r ++aGFk++pl+ +++k a+ ++ ++++ + ++e++ +l++gWk+r L+++S W+ TRIUR3_23165-P1 697 RLLIESTIFSREAINVISCEGMERMERPETYKQWQVRNQRAGFKQLPLDPEIMKRAREKVKCYHKN-FIIDEDNRWLLQGWKGRILYALSTWK 788 *********************************************************99966.***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	65.189	392	769	IPR005202	Transcription factor GRAS
Pfam	PF03514	7.2E-112	419	788	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 794 aa Download sequence Send to blast
MENDMNIFYA MNYLVGKECA RAHECGLFGD SSANQEIHVS GLVERVAELP RKSNGSPVRW 60 EIGISVCLNR MLCGGGSGVS MPDDSEVFSD IVLGYINRML MAEDIDEKFD HYPAHPALLA 120 AEKPFLEILA DQPPCSGGST VESPDGSSVT TNSFNSHGSC NCAAPSGGGL GAMQAPPALE 180 FPTAEFLQPP QFYQDLSPES CVVEAGGAWP PYDAMEFNPL PDALLSQSSS FASSNGSSVA 240 FSEGFEPWLS TAGAVPDAAL SDFVLQSQQA AQFSRGFEEA SRFLPQESKL VIDVDSLPSV 300 WVKEDKKVVE VKKEKADSEV AIHRGKKHFY GDDLDADEVR CCKHSAPVVD ADHLVREMMD 360 KVLLCNGETC SRGVKELREA LQHDVAAHSG GAHGKGSGHG KGRGKKQVKQ PKKEVVDLET 420 LLIHCAQSVS IDDRRSATDL LKQIRQHASA TGDGDQRLAH CFANGLEARL AGNGSQIYKL 480 HTISRFACTD VLKAYQLYLA ACPFKKISHY FANQTIMNAV EKAKKVHIVD FGVYYGFQWP 540 CLIQRLSKRL GGPPELRITA IDTPQPGFRP AERIEEIGRY LSDYAQTFKV PFKYHGIASQ 600 FEAVRVEDLH IEKDEILIVN SMFRFKTLMD ESVVAESPRN MVLNTIRKMK PHVFIHGVTN 660 GSYNAPFFVS RFREALFQFS AHFDMLEANI PRDNEERLLI ESTIFSREAI NVISCEGMER 720 MERPETYKQW QVRNQRAGFK QLPLDPEIMK RAREKVKCYH KNFIIDEDNR WLLQGWKGRI 780 LYALSTWKAN PQSS

Sequence ? help Back to Top

Protein Sequence Length: 794 aa Download sequence Send to blast

MENDMNIFYA MNYLVGKECA RAHECGLFGD SSANQEIHVS GLVERVAELP RKSNGSPVRW  60
EIGISVCLNR MLCGGGSGVS MPDDSEVFSD IVLGYINRML MAEDIDEKFD HYPAHPALLA  120
AEKPFLEILA DQPPCSGGST VESPDGSSVT TNSFNSHGSC NCAAPSGGGL GAMQAPPALE  180
FPTAEFLQPP QFYQDLSPES CVVEAGGAWP PYDAMEFNPL PDALLSQSSS FASSNGSSVA  240
FSEGFEPWLS TAGAVPDAAL SDFVLQSQQA AQFSRGFEEA SRFLPQESKL VIDVDSLPSV  300
WVKEDKKVVE VKKEKADSEV AIHRGKKHFY GDDLDADEVR CCKHSAPVVD ADHLVREMMD  360
KVLLCNGETC SRGVKELREA LQHDVAAHSG GAHGKGSGHG KGRGKKQVKQ PKKEVVDLET  420
LLIHCAQSVS IDDRRSATDL LKQIRQHASA TGDGDQRLAH CFANGLEARL AGNGSQIYKL  480
HTISRFACTD VLKAYQLYLA ACPFKKISHY FANQTIMNAV EKAKKVHIVD FGVYYGFQWP  540
CLIQRLSKRL GGPPELRITA IDTPQPGFRP AERIEEIGRY LSDYAQTFKV PFKYHGIASQ  600
FEAVRVEDLH IEKDEILIVN SMFRFKTLMD ESVVAESPRN MVLNTIRKMK PHVFIHGVTN  660
GSYNAPFFVS RFREALFQFS AHFDMLEANI PRDNEERLLI ESTIFSREAI NVISCEGMER  720
MERPETYKQW QVRNQRAGFK QLPLDPEIMK RAREKVKCYH KNFIIDEDNR WLLQGWKGRI  780
LYALSTWKAN PQSS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	7e-46	422	788	8	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG670306	0.0	HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020188125.1	0.0	scarecrow-like protein 9
TrEMBL	M7YUT7	0.0	M7YUT7_TRIUA; Uncharacterized protein
STRING	TRIUR3_23165-P1	0.0	(Triticum urartu)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12518	31	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	1e-170	GRAS family protein