PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_23152-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 286aa    MW: 30903.7 Da    PI: 9.6195
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_23152-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.43.5e-102132531055
                      HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +rRR++iN+++  L++l+P+      +K++ a++Le+Av Y+k Lq
  TRIUR3_23152-P1 213 KRRREKINDRLRVLQKLVPNG-----TKVTLATMLEEAVLYVKFLQ 253
                      8******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.456203252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-13206268IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.7E-10209258IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-12209264IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.52E-11212257No hitNo description
PfamPF000103.4E-7213253IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
AAAVRSQEAA RWSPCHAPDE EESEIVAQFL TAPYPCFDGG YDFLGEPDVS LGINTLSYCG  60
SIDLNLSRKE ERAGKRGGNG NMVPGPSPPA GRGRVRAGAG YLLSDRDSNG DGAAATPKRK  120
VFQAGHAHDQ GGDLGRHKKK ARAADHKAWR EKSVTSKTKM AQQKRRSSSY CSDNESNCSQ  180
GDGGEEANVA GGGTVKVRAG RGSAADPQSL YAKRRREKIN DRLRVLQKLV PNGTKVTLAT  240
MLEEAVLYVK FLQLQIKVLS SDEMWMYAPL AYSGMSFGID LRITPQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020167813.11e-179transcription factor bHLH54-like
TrEMBLT1MYM90.0T1MYM9_TRIUA; Uncharacterized protein
STRINGTRIUR3_23152-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP144452123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33880.16e-47ROOT HAIR DEFECTIVE 6-LIKE 2