PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_23044-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family M-type_MADS
Protein Properties Length: 365aa    MW: 39520.3 Da    PI: 5.4687
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_23044-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF321.6e-101056349
                     --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
           SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                     i+++  r  tfskR  g++K A  LS  + a+va+++  ++ k++ +
  TRIUR3_23044-P1 10 INDDKERDFTFSKRCGGLFKVAADLSAVTSARVAIVVEKENEKMHSF 56
                     88999***************************************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006614.03160IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.71E-13373IPR002100Transcription factor, MADS-box
SMARTSM004321.6E-4359IPR002100Transcription factor, MADS-box
PfamPF003191.9E-141056IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
KDRRSAITYI NDDKERDFTF SKRCGGLFKV AADLSAVTSA RVAIVVEKEN EKMHSFGMPF  60
ADPIVDAFLA CAPLAIPLAD EATTTRIAQL QGEVARLDMH CMTEFKENQL SIKHMKQILE  120
QHPGTVANLI FSKEEELGPK DLKNLSTEIY RVHEEIGHQL PPLHYGHKAM TSGASMIQNM  180
PPSSGPPSNH MKTVPSSAHS PWAHHLPQHQ MPSSPPPPGQ IVAPQVPQEP SMFHPAPSSS  240
VPQIASQLQT TSNQALELPP PLDISINDYV SSSNPVNPQQ NNANPNSTTG YNLVASPLLV  300
NSGVNDLIVN DPFGYESWGH GPSDQPFYNG FLEMGAYMGY NGADVGQSSV GNGGWIDAPP  360
ESSSS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020185126.11e-153pheromone receptor transcription factor-like
TrEMBLT1MYC50.0T1MYC5_TRIUA; Uncharacterized protein
STRINGTRIUR3_23044-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30892276
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22630.15e-10AGAMOUS-like 17