PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIUR3_22207-P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | GRAS | ||||||||
Protein Properties | Length: 414aa MW: 46492 Da PI: 6.0624 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 73.5 | 4e-23 | 120 | 214 | 1 | 98 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 l+elLl+cA+av+++++ +++ ++ +l++++s +g+p++Rl ay++e+L arla+s++++ykal+++e + ss+ l+++++++e++P++kf+ TRIUR3_22207-P1 120 LKELLLACARAVEEKNMYAVDVMVPELRKMVSVSGTPLERLGAYMVEGLVARLASSGHSIYKALRCKEPK---SSDLLSYMHFLYEACPYFKFG 210 5799*****************************************************************9...9******************** PP GRAS 95 hlta 98 ++++ TRIUR3_22207-P1 211 YMIT 214 *975 PP | |||||||
2 | GRAS | 23.7 | 5.4e-08 | 213 | 273 | 144 | 203 |
GRAS 144 iTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEala 203 iTg+++ s + l +g+rL+++A ++vpfef+ va + e++e +L v pgEala TRIUR3_22207-P1 213 ITGIDDTVSAyaRGGGLDLVGRRLSHIAGLCKVPFEFHS-VAMAGEEVEEAHLGVVPGEALA 273 99**998877889999***********************.7999****************98 PP | |||||||
3 | GRAS | 170.3 | 1.5e-52 | 272 | 413 | 231 | 373 |
GRAS 231 vkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGF 324 + +l+P+v+++veqe+++n+++F +rf+e+l+yy+a+f+s++ +lpr+++er+++E+++l+re+vn++acegaer+erhe ++kW++rl++aGF TRIUR3_22207-P1 272 LAGLRPRVLTLVEQESNTNTAPFPQRFAETLDYYAAIFESIDLTLPRDDRERVNMEQHCLAREVVNLIACEGAERVERHEVFGKWKARLTMAGF 365 5689****************************************************************************************** PP GRAS 325 kpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 +p pls +++++++ll+ ++++ y++ e++g+l+lgWk++pLv+ SaW TRIUR3_22207-P1 366 RPSPLSALVNATISTLLQSYSEN-YKLAERDGALYLGWKSKPLVVSSAW 413 *********************55.************************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 22.481 | 1 | 395 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.4E-20 | 120 | 214 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 5.1E-50 | 272 | 413 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 414 aa Download sequence Send to blast |
MADTPTSRMI HPFSNMQRQN PKQFQFQYSD NPQHPCRPYQ PSPDTHVVPQ HLYSLKSHSS 60 DASYENQDPN DLKQKLKDLE AEMLGPDAEI VNSLESSVAK QLSLEPEKWA QMMDFPRGDL 120 KELLLACARA VEEKNMYAVD VMVPELRKMV SVSGTPLERL GAYMVEGLVA RLASSGHSIY 180 KALRCKEPKS SDLLSYMHFL YEACPYFKFG YMITGIDDTV SAYARGGGLD LVGRRLSHIA 240 GLCKVPFEFH SVAMAGEEVE EAHLGVVPGE ALAGLRPRVL TLVEQESNTN TAPFPQRFAE 300 TLDYYAAIFE SIDLTLPRDD RERVNMEQHC LAREVVNLIA CEGAERVERH EVFGKWKARL 360 TMAGFRPSPL SALVNATIST LLQSYSENYK LAERDGALYL GWKSKPLVVS SAWH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 1e-24 | 127 | 413 | 26 | 378 | Protein SCARECROW |
5b3h_A | 1e-24 | 127 | 413 | 25 | 377 | Protein SCARECROW |
5b3h_D | 1e-24 | 127 | 413 | 25 | 377 | Protein SCARECROW |
5hyz_A | 1e-24 | 124 | 414 | 8 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK364179 | 1e-180 | AK364179.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2022G24. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020176499.1 | 0.0 | chitin-inducible gibberellin-responsive protein 2-like | ||||
Swissprot | Q8GVE1 | 0.0 | CIGR2_ORYSJ; Chitin-inducible gibberellin-responsive protein 2 | ||||
TrEMBL | M7ZJK7 | 0.0 | M7ZJK7_TRIUA; Uncharacterized protein | ||||
STRING | TRIUR3_22207-P1 | 0.0 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1513 | 37 | 117 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50600.1 | 1e-127 | scarecrow-like 5 |
Publications ? help Back to Top | |||
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