PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_22025-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family NF-YA
Protein Properties Length: 305aa    MW: 33279.4 Da    PI: 10.0108
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_22025-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA102.34.5e-32154210158
        CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                      +ep++VNaKQy++Il+RRq Rakle+++kl  k+rkpylheSRh+hA++R+Rg+gGrF
  TRIUR3_22025-P1 154 EEPMFVNAKQYHAILRRRQIRAKLEAQNKL-VKARKPYLHESRHRHAMKRARGTGGRF 210
                      69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.2E-37152213IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115238.001153213IPR001289Nuclear transcription factor Y subunit A
PfamPF020454.6E-27155210IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.5E-24156178IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860158178IPR018362CCAAT-binding factor, conserved site
PRINTSPR006162.5E-24187210IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0009785Biological Processblue light signaling pathway
GO:0010262Biological Processsomatic embryogenesis
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
LTLMCKMEDH PGHPISNYDF LSGNGVHTNK LVHKNYDRDS SSAKSGRSQQ EASATSDSGL  60
NEQHTSRPSS QSDNDNDHGK PDQHMVKPLL SLGNPETVAP PPMLDCSQSF AYIPYTADAY  120
AGIFPGYASH AIVHPQLNAA TNSRVPLPVE PAAEEPMFVN AKQYHAILRR RQIRAKLEAQ  180
NKLVKARKPY LHESRHRHAM KRARGTGGRF LNTKQLEEQK QKQASGGASC TKVLGKNTLL  240
QDSPAFAPSA SAPANMSSFS TISMLANQER TCFPSVGFRP TVSFSALNGN GKLATNGMHQ  300
RASMM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A4e-23154215263NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1194203RHRHAMKRAR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU9027840.0GU902784.1 Triticum monococcum nuclear transcription factor Y subunit A9 mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020159951.10.0nuclear transcription factor Y subunit A-7-like
RefseqXP_020159952.10.0nuclear transcription factor Y subunit A-7-like
RefseqXP_020159953.10.0nuclear transcription factor Y subunit A-7-like
TrEMBLT1MVL70.0T1MVL7_TRIUA; Uncharacterized protein
STRINGTRIUR3_22025-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP137338121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54160.14e-34nuclear factor Y, subunit A5