PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

TRIUR3_21533-P1

Organism

Triticum urartu

Taxonomic ID

4572

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

GRAS

Protein Properties

Length: 675aa MW: 74972.9 Da PI: 6.5952

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIUR3_21533-P1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	334.6	1.8e-102	298	669	2	373
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 +lLl+cA+a+s+++ + a +lL+r+++++sp+gd+ qRla+yf+++L+arla+ +sely++l s+ s +++ l+a +l+ ++ + k+++ TRIUR3_21533-P1 298 HTLLLNCAQALSTDNRQSAIELLKRIRQHSSPKGDAGQRLAHYFANGLEARLAGRGSELYQSLLLSRIS---VADFLKANQLYMAACCCKKVAY 388 679**********************************************************999998...****************** PP GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrle 187 + a ++I +av+g++r+Hi+D++++qGlQWp Ll+ La+R++gpp++RiTg++ p++g + +eetg+rL++fA+ +gvpf+f+ + + e TRIUR3_21533-P1 389 IFADKTICNAVAGKRRLHIVDYGLNQGLQWPGLLRMLAAREGGPPEVRITGIDLPQPGfhGAYHIEETGRRLSNFARMFGVPFKFRG-IPAKRE 481 *****************************************************999999*********************.69999 PP GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres 279 ++++e+L+++++E+l+V + + +l+des+ + +rd+vL+ +++++P+v+++ + +++++sFl+rf eal +ysa fd l++++pr++ TRIUR3_21533-P1 482 TVRPEDLNIDRDEVLVVISLCHFRHLMDESLGFDGpsPRDQVLNNIRKMRPDVFIHGIMNGSYGATSFLTRFREALFHYSAQFDLLDTTAPRDN 575 ****************************98876669**************************************************** PP GRAS 280 eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 e r +Er ++gr+ nv+acega+r+er et+++W+ r ++aG++++pl+ +++k + ++ + + + v+ ++ +l+ Wk+r L++ S+W TRIUR3_21533-P1 576 EGRLLLERDIFGRSCLNVLACEGADRVERPETYKQWQLRNHRAGLRQLPLNPEVVKLVLDKVKDNYHRNFVVDADQRWLLHRWKGRVLYAWSSW 669 **************************************************************999*********************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	59.35	271	650	IPR005202	Transcription factor GRAS
Pfam	PF03514	6.3E-100	298	669	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 675 aa Download sequence Send to blast
MAATPEEFLG QQGFLARLEP PSPSLFLDLP PTPRDDDGHS SFDDMVLPYI SRLLMEEGTE 60 DHLFYLYPNH PAVLRAQQPF AQILVDPADS ASASGSTSSP SSSSDATAST TPSTATASAS 120 ASASPDDAPV QISRPPYTDV NGHASASPDN HSPGLLNGDE MAKRPSSDLF NHLLPRDEDM 180 LNLAFLKGME EASKFLPPDI TLSINEGTVV GGGNAVSLNN KKRAALALEP DVGRPSKLMM 240 PEQEERKMFD EMMFQEHEIC MKGTQNLTAA VDGEPGKNSR KNGRSRKAVD DSEMVDLHTL 300 LLNCAQALST DNRQSAIELL KRIRQHSSPK GDAGQRLAHY FANGLEARLA GRGSELYQSL 360 LLSRISVADF LKANQLYMAA CCCKKVAYIF ADKTICNAVA GKRRLHIVDY GLNQGLQWPG 420 LLRMLAAREG GPPEVRITGI DLPQPGFHGA YHIEETGRRL SNFARMFGVP FKFRGIPAKR 480 ETVRPEDLNI DRDEVLVVIS LCHFRHLMDE SLGFDGPSPR DQVLNNIRKM RPDVFIHGIM 540 NGSYGATSFL TRFREALFHY SAQFDLLDTT APRDNEGRLL LERDIFGRSC LNVLACEGAD 600 RVERPETYKQ WQLRNHRAGL RQLPLNPEVV KLVLDKVKDN YHRNFVVDAD QRWLLHRWKG 660 RVLYAWSSWI AADAT

Sequence ? help Back to Top

Protein Sequence Length: 675 aa Download sequence Send to blast

MAATPEEFLG QQGFLARLEP PSPSLFLDLP PTPRDDDGHS SFDDMVLPYI SRLLMEEGTE  60
DHLFYLYPNH PAVLRAQQPF AQILVDPADS ASASGSTSSP SSSSDATAST TPSTATASAS  120
ASASPDDAPV QISRPPYTDV NGHASASPDN HSPGLLNGDE MAKRPSSDLF NHLLPRDEDM  180
LNLAFLKGME EASKFLPPDI TLSINEGTVV GGGNAVSLNN KKRAALALEP DVGRPSKLMM  240
PEQEERKMFD EMMFQEHEIC MKGTQNLTAA VDGEPGKNSR KNGRSRKAVD DSEMVDLHTL  300
LLNCAQALST DNRQSAIELL KRIRQHSSPK GDAGQRLAHY FANGLEARLA GRGSELYQSL  360
LLSRISVADF LKANQLYMAA CCCKKVAYIF ADKTICNAVA GKRRLHIVDY GLNQGLQWPG  420
LLRMLAAREG GPPEVRITGI DLPQPGFHGA YHIEETGRRL SNFARMFGVP FKFRGIPAKR  480
ETVRPEDLNI DRDEVLVVIS LCHFRHLMDE SLGFDGPSPR DQVLNNIRKM RPDVFIHGIM  540
NGSYGATSFL TRFREALFHY SAQFDLLDTT APRDNEGRLL LERDIFGRSC LNVLACEGAD  600
RVERPETYKQ WQLRNHRAGL RQLPLNPEVV KLVLDKVKDN YHRNFVVDAD QRWLLHRWKG  660
RVLYAWSSWI AADAT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	2e-42	303	625	24	333	Protein SCARECROW
5b3h_D	2e-42	303	625	24	333	Protein SCARECROW
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK367226	0.0	AK367226.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2053C24.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020172168.1	0.0	scarecrow-like protein 34
TrEMBL	M7ZQI4	0.0	M7ZQI4_TRIUA; Uncharacterized protein
STRING	TRIUR3_21533-P1	0.0	(Triticum urartu)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP231	31	297

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	1e-136	SCARECROW-like 14