PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_21067-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 333aa    MW: 35920.2 Da    PI: 4.5619
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_21067-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.40.00023309330323
                      ETTTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   3 CpdCgksFsrksnLkrHirt.H 23 
                      C+ C+k+F++   L +H +  H
  TRIUR3_21067-P1 309 CKSCSKTFNSEGALASHSKAkH 330
                      *****************88766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.471307333IPR007087Zinc finger, C2H2
PROSITE patternPS000280309330IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009294Biological ProcessDNA mediated transformation
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010162Biological Processseed dormancy process
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005618Cellular Componentcell wall
GO:0005730Cellular Componentnucleolus
GO:0005739Cellular Componentmitochondrion
GO:0005774Cellular Componentvacuolar membrane
GO:0005829Cellular Componentcytosol
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MEFWGLEVKP NQSVKVSPDD DHFLHLSQGA LGEVKKDDKA TMFVKIGDQK LAIGTLSTDK  60
FPQIQFDLVF EKEFELSHNS KTSSVFFSGY KDESEEEQDT IIPALTKENG MHISPVASSH  120
IYLGWNTSGN GEMMTLVNAF FFFLPFQGKP EAKEQKKQVK IDTAAPSKSK PAAKDGGKSN  180
KDDDSDDDDD SDEDDSQDDS GDDGSLIPME DDSDDSEDGD DSSDDSEDSS DEEEEETPKK  240
QETGKKRAAG SVLKTPVTDK KAKIATPSGQ KTGDKKGAVH VATPHPAKKA GKTPATSDKS  300
PKSGGSVACK SCSKTFNSEG ALASHSKAKH EAK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ6566020.0DQ656602.1 Triticum aestivum histone deacetylase HDAC2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020199042.11e-126histone deacetylase HDT2-like
TrEMBLM7YRH10.0M7YRH1_TRIUA; Histone deacetylase HDT1
STRINGTRIUR3_21067-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22043065
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44750.21e-27histone deacetylase 3