PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_20767-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 1277aa    MW: 140031 Da    PI: 7.8046
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_20767-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.28.2e-154024851499
                      T-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
               B3  14 grlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 
                      + +++pk++a+ h   ++es t+tl++  ++++W  ++   kk+ ++ lt+ W +Fv++n++ egD+++F   +  + f ++v+++rk
  TRIUR3_20767-P1 402 SYVTIPKEYAAVHF--PPESATITLRSpGKNKKWHPRF--YKKGTMIKLTGSWLHFVRDNDVHEGDICIFVPAKGgKPFMFTVHLLRK 485
                      4589******9998..45789******5566*******..9999***************************77655999999999987 PP
2B352.87.2e-17542638399
                      EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..E CS
               B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelv 93 
                      +++t+s+ ++++++ l+k++a+eh   +++++tl+++   g+ W++++ +  rk+++r +l +GW++F ++n L+ gD+++F+l+++ +e +  
  TRIUR3_20767-P1 542 SIMTKSNLGSRHMVELSKRYAAEHL--PHRNVTLMFQY-MGKIWNINMLFhdRKYPKRWYLIGGWSKFISDNSLRLGDICLFELKKDeKELTVI 632
                      6899********************5..34677888776.9********9999******99999**********************998999999 PP

                      EEEE-S CS
               B3  94 vkvfrk 99 
                      v+++rk
  TRIUR3_20767-P1 633 VHLLRK 638
                      999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.8E-18384485IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-19386485IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.956389486IPR003340B3 DNA binding domain
SMARTSM010194.4E-9392486IPR003340B3 DNA binding domain
CDDcd100171.03E-16392484No hitNo description
PfamPF023627.2E-13402485IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.5E-19529638IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.34E-20534643IPR015300DNA-binding pseudobarrel domain
CDDcd100176.41E-20538634No hitNo description
PROSITE profilePS5086312.915540639IPR003340B3 DNA binding domain
SMARTSM010193.0E-14540639IPR003340B3 DNA binding domain
PfamPF023627.6E-14541638IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1277 aa     Download sequence    Send to blast
MTRLSIRGCE TKYVFTAFGH LPYHPTSLKH VPYVWSSRIR TIFDMGGVRI RARDPSVYYH  60
ELRRSRSLRP FFDGSDEVGP GVRARFRPEL VPFTPTESEV KAPGSAGSLE AGLRRGQTPD  120
SRLRWLASRS AVGFSTGFKR PVRSAQKVML QNIKIWSGMK MSLAWVGFPM NGSTIDPLAI  180
HNGTLNESTN VGVKTGGSRE KRFRKGHEYK PAHCAALLDR PASGVGEACI HMYQTPTYPG  240
GAEGAVPSSL MDTPLTEERR AARRVPRRVC SSGSPTSLNH GESDDAQEMS TNSTEISSSD  300
CYTQLSSESS DEGCENRSSG HRRKRRKTYV ISSASEQSGQ DSPSACESLE SDDVQITPGK  360
DYVLPQRCDL SDAEKNRVVV LIKEIKAKVT VFVAIMLRSY SSYVTIPKEY AAVHFPPESA  420
TITLRSPGKN KKWHPRFYKK GTMIKLTGSW LHFVRDNDVH EGDICIFVPA KGGKPFMFTV  480
HLLRKETTDS QTEVSHESSE CEDSHGQPPY ILPYGARLSP SQRSAVKKKV DSIQSEVPIY  540
VSIMTKSNLG SRHMVELSKR YAAEHLPHRN VTLMFQYMGK IWNINMLFHD RKYPKRWYLI  600
GGWSKFISDN SLRLGDICLF ELKKDEKELT VIVHLLRKES IDHPSGVSPV LDSNYVRAST  660
MIASTVRVGE EPDDEEETAS SGREEQGFDD EPIEHNYSEG ASKAHMPTAP CSESNVSGIS  720
LSPEAREQAA GCSNKSFATE FPNKPSSTME HNRIIHTDRA AASEVIGLSD YRIHNSCDSI  780
DSQGGESLAV QQQSSPSPGI GNSVNLITVY LSLRDSSSCD HRSAEHVEGE SDVALQSSVR  840
VTGQQVGDAE KEVNASGGEN TLADLPHLEP QNVAAVPTQA ALPMPKEKTD TQTNRSAQSD  900
VAQAQPPQGE VEQVGLSGVA TPQPLQPEMQ ASLSREVEAP ANVVIQSAQP LVLEMQPSTP  960
LSNIPLERTH QNRGQSSRQP EAAAGSAQPA QLFPAPSMMF NHPPIGDEPL KNELHRLRLH  1020
IDSLDKIYEL KQSQLQTECS QEIEKIKQKY DLLLEERDSV HLEQMKTLDG LLEKVVFHQS  1080
LAADFRAKFI SSSAAQAKAY SRPIHQTPQA SQQAPMRPPG VTSTSPPAAW SSAGRPVVPG  1140
GAQPSQVDRP STPASSQAPR PPLPFPQVVR PPINPGNLVR TTGAPTSHMP RGPPRGGHGV  1200
PSAPAPHLQR RLPPWAHSTS PANQRQQQQH ATSVSSQSSH AVPPVSSSPL PPSRSQATHH  1260
GSSTRMDVDV VCLSDDE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703061e-110HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020151567.10.0uncharacterized protein LOC109736772
TrEMBLT1MS690.0T1MS69_TRIUA; Uncharacterized protein
STRINGTRIUR3_20767-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP165236
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31640.15e-10B3 family protein