PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_20588-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family M-type_MADS
Protein Properties Length: 313aa    MW: 35041.9 Da    PI: 5.4074
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_20588-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF81.36.1e-26958150
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                     krien++nr+vtfskRrng++KKA+ELSvLCd+++a+++fs++ +l  +s
  TRIUR3_20588-P1  9 KRIENNTNRHVTFSKRRNGLIKKAYELSVLCDIDIALLMFSPSRRLCPFS 58
                     79*****************************************9998775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.5E-33160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006627.628161IPR002100Transcription factor, MADS-box
SuperFamilySSF554559.29E-28282IPR002100Transcription factor, MADS-box
CDDcd002657.67E-34278No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004045.2E-23323IPR002100Transcription factor, MADS-box
PfamPF003191.2E-231055IPR002100Transcription factor, MADS-box
PRINTSPR004045.2E-232338IPR002100Transcription factor, MADS-box
PRINTSPR004045.2E-233859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010152Biological Processpollen maturation
GO:0080092Biological Processregulation of pollen tube growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MGRVKLAIKR IENNTNRHVT FSKRRNGLIK KAYELSVLCD IDIALLMFSP SRRLCPFSGR  60
HGVEDVLLRY LNMSDNDRGE PIQNREYLIS MLQRLKRESD MATQLANPGA LNEKIEEIQK  120
EIYACQQQLQ ISEERLRLFE PDPAAFGSTG DIDNCEKFLM EMLTRVVERK NYLLSNLAPF  180
DPTAPGMQGG NGAQMYVHAM KTEEGGGMGA FAGDAAALWG SEDGQNPGHQ IFGGTDPMIY  240
LRHVTYNCHV QTTDPWRQEF SCTELLSTLI PNTPFPLMQH CLGPDDGNYL PTMVPAAQAQ  300
LEASASCSYN MPT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6bz1_A8e-18197190MEF2 CHIMERA
6bz1_B8e-18197190MEF2 CHIMERA
6bz1_C8e-18197190MEF2 CHIMERA
6bz1_D8e-18197190MEF2 CHIMERA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4693359e-99KF469335.1 Brachypodium distachyon MADS-box transcription factor 41 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020194809.10.0agamous-like MADS-box protein AGL66
TrEMBLT1MRP80.0T1MRP8_TRIUA; Uncharacterized protein
STRINGTRIUR3_20588-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP49533360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77980.15e-71AGAMOUS-like 66