PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_20586-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 492aa    MW: 52021.8 Da    PI: 6.1348
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_20586-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.26.2e-053956219
                     EETTTTEEESSHHHHHHH CS
          zf-C2H2  2 kCpdCgksFsrksnLkrH 19
                     +C++Cgk F+++ +L  H
  TRIUR3_20586-P1 39 VCENCGKEFTSWKSLLDH 56
                     6***************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.63865IPR007087Zinc finger, C2H2
SMARTSM003551803858IPR015880Zinc finger, C2H2-like
SuperFamilySSF576675.22E-8209232No hitNo description
PROSITE profilePS5015710.221210237IPR007087Zinc finger, C2H2
PfamPF139123.3E-9210234IPR007087Zinc finger, C2H2
SMARTSM003550.13210232IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280212232IPR007087Zinc finger, C2H2
SuperFamilySSF576675.22E-8327354No hitNo description
PfamPF139121.5E-12331355IPR007087Zinc finger, C2H2
SMARTSM003550.46332354IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.349332354IPR007087Zinc finger, C2H2
PROSITE patternPS000280334354IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048235Biological Processpollen sperm cell differentiation
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 492 aa     Download sequence    Send to blast
DDDGGGVGES SEAGSPSPTT AKRMYGLRAN PGRLRNCRVC ENCGKEFTSW KSLLDHGRCS  60
FDEDDDLDGS LRSSSPPHNN ADEGLDEDDE EEGDLALASG WSKGKRSRRA KVMIAGSSAI  120
SEVQQPAPSS EEEDLANCLV MLSSSRVTQP TVHVDADQES SASASKDEER NKLLVPQPLS  180
IIPPMTAQFK FSAPQVVVAQ HVPTVPRGLF ECKACKKVFT SHQALGGHRA SHKKVKGCFA  240
AKLESSRNES THQQAMASAA LHDNTRAIPE AVGDTSTAEG KSGNLDAGKA TSVGAGEFVV  300
PAATTEMAIM PIADAAPVAA AFSPFKKKGK VHECSICHRV FTSGQALGGH KRCHWLTSSA  360
TDPAKLQPVV PDHLMAAMCH HLTLGRPMFD TADQRILDLN VPTNPSAEAV ATRQAAELHH  420
TPLCXXXXXX XXXTGAAAGG GAATEDEADS TSAKRAKVSD LKDMKVAGES LSWLQVGIGI  480
SSSENNEKSA QE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3735500.0AK373550.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3034L08.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020186304.10.0uncharacterized protein LOC109772023
TrEMBLT1MRP60.0T1MRP6_TRIUA; Uncharacterized protein
STRINGTRIUR3_20586-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35243262
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35280.14e-19C2H2-like zinc finger protein