PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_20168-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family SBP
Protein Properties Length: 747aa    MW: 84132 Da    PI: 6.924
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_20168-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP29.32.2e-0932545476
                     T--SS--S-STTTT-------S- CS
              SBP 54 efDeekrsCrrrLakhnerrrkk 76
                      fDe+krsCrr+L++hn+rrr+k
  TRIUR3_20168-P1 32 YFDEDKRSCRRKLERHNKRRRRK 54
                     5*******************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS511419.904154IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.73E-62957IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0055070Biological Processcopper ion homeostasis
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 747 aa     Download sequence    Send to blast
MRVLGFKHWW VESYAHNSTR RWFGSCLFYE YYFDEDKRSC RRKLERHNKR RRRKPDSKGT  60
LEKEIDEQLD LSADGSGSGE IREENIDGAS CDMLETVLSN KVLDRETPVG SEDALSSPTC  120
TQLSLQNDRS KSILTFAASA EACLGAKQEN AKLTNSPVHD SKSAYSSSCP TGRISFKLYD  180
WNPAEFPRRL RNQIFEWLSS MPVELEGYIR PGCTILTVFI AMPQHMWDKL SEDTANLVRN  240
LVNAPSSLLL GKGAFFVHAN NTIFQVLKDG ATLMSTRLEV QAPRIHCVHP TWFEAGKPIE  300
LLLCGSSLDQ PKFRSLLSFD GEYLKHDCCR LTSRETFGCV KNGASTFDSH HEVFRINITQ  360
TKPDTHGPGF VEKTRAKQTC ITKYLTIENY RKQVHSGDLW AQNMSMKLCK PIKDIQVENV  420
FGLSNFVPIL FCSKQLCFEL ERIQDALCGS SKYKSANGEF PGITSDPCEH WKLQQTAMSG  480
FLIEIGWLIK KPSPDEFKKL LSKTNVERWI CVLEFLIQNN FTNVLEMIVK SSDNIIGSEI  540
LSNLESGRLE HHVTAFVGYI RHARIIVDQR AKHNEETQLQ TRWCGDSVSD QPSLGTSVPL  600
GKENVTASDD FCLPSTNAEC EEEVSVPLVT NEAVSHRQCR APEMNARWLN PALVAPFPSG  660
MMRTRLVATV AVAAILCFTA CVAVFHPHRV GVLAAPVKSS EPPGVSEGLI GLLRVVVVTA  720
AHIWEFFTLW ILLNDVHLHE QTEDTIF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13654KRSCRRKLERHNKRRRRKP
24052RRKLERHNKRRRR
34754NKRRRRKP
44853KRRRRK
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00604PBMTransfer from AT5G18830Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2503120.0AK250312.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf72c21, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020161545.10.0squamosa promoter-binding-like protein 9
SwissprotQ6I5760.0SPL9_ORYSJ; Squamosa promoter-binding-like protein 9
TrEMBLM7YSF00.0M7YSF0_TRIUA; Squamosa promoter-binding-like protein 9
STRINGTRIUR3_20168-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69223344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18830.26e-90squamosa promoter binding protein-like 7
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]