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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIUR3_19927-P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | B3 | ||||||||
Protein Properties | Length: 189aa MW: 21159.5 Da PI: 7.9605 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 58.5 | 1.2e-18 | 3 | 66 | 36 | 98 |
EEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE- CS B3 36 ltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfr 98 l++ede ++ W+++++y+ +s++yvltkGW+++vk+++L++gD+v F++++ ++ ++ +r TRIUR3_19927-P1 3 LSFEDEASKPWRFRYSYWTSSQSYVLTKGWSRYVKEKQLDAGDIVHFERVRGlGTGDRLFICCR 66 6899********************************************8866544444444443 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 12.196 | 1 | 68 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.8E-16 | 3 | 67 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.55E-15 | 3 | 66 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.9E-21 | 3 | 73 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.10E-13 | 5 | 54 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 189 aa Download sequence Send to blast |
LLLSFEDEAS KPWRFRYSYW TSSQSYVLTK GWSRYVKEKQ LDAGDIVHFE RVRGLGTGDR 60 LFICCRRRGE SAPPPPLRVS PPALNAGEQQ PWSPMCYSTS GSYPTSPANS HAYRRSVEQD 120 HSDMLHAGDS PREANAKSST ASGPPSRRLR LFGVNLDCGP EPEAEAATPM YDYTHQNPYA 180 AVVTVPAYW |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 2e-25 | 1 | 68 | 45 | 113 | B3 domain-containing transcription factor NGA1 |
5os9_B | 2e-25 | 1 | 68 | 45 | 113 | B3 domain-containing transcription factor NGA1 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK375277 | 4e-69 | AK375277.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3089K07. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020195164.1 | 1e-117 | B3 domain-containing protein Os11g0156000-like | ||||
Swissprot | Q53QI0 | 3e-92 | Y1160_ORYSJ; B3 domain-containing protein Os11g0156000 | ||||
TrEMBL | T1MPX3 | 1e-138 | T1MPX3_TRIUA; Uncharacterized protein | ||||
STRING | TRIUR3_19927-P1 | 1e-138 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2446 | 38 | 89 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06250.2 | 1e-32 | B3 family protein |
Publications ? help Back to Top | |||
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