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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIUR3_19842-P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | SBP | ||||||||
Protein Properties | Length: 252aa MW: 28015 Da PI: 5.2862 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 38.5 | 3.2e-12 | 3 | 33 | 48 | 78 |
SEEETTT--SS--S-STTTT-------S--- CS SBP 48 rfhelsefDeekrsCrrrLakhnerrrkkqa 78 rfh l+efDe+krsCr+rL++ n+rrr +q TRIUR3_19842-P1 3 RFHLLEEFDEAKRSCRKRLDERNRRRRAPQV 33 9**************************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51141 | 12.896 | 1 | 31 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 4.8E-7 | 3 | 30 | IPR004333 | Transcription factor, SBP-box |
Gene3D | G3DSA:4.10.1100.10 | 1.8E-4 | 3 | 18 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 9.42E-10 | 3 | 35 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
LFRFHLLEEF DEAKRSCRKR LDERNRRRRA PQVDSKDSWS FMITQQGTSF ASFSPPRAEP 60 SWSGIINYED SNPYYTHEVL SKSRQTFTGW TSSDTMEGCH CPFLYEGEPM SFSAGAQPLL 120 KAVTPPPPES SSSIVLSSDC ALSFLSSPAN SSSIDISWMV RPREQIPSVA QQHLVPNQQF 180 SSSSWFASSQ ASSGVCTAAG FATLPNMDID QFNAGALVLS SNDREMNCHG IFHVGADGYS 240 EGTSPYFQFS WQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020197530.1 | 1e-132 | squamosa promoter-binding-like protein 18 | ||||
Swissprot | Q6YZE8 | 1e-53 | SPL16_ORYSJ; Squamosa promoter-binding-like protein 16 | ||||
TrEMBL | T1MPP6 | 0.0 | T1MPP6_TRIUA; Uncharacterized protein | ||||
STRING | TRIUR3_19842-P1 | 0.0 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1755 | 37 | 95 |