PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_19594-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family HSF
Protein Properties Length: 567aa    MW: 62356.1 Da    PI: 4.8437
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_19594-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.27e-35671572101
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      Fl+k+y++++d+++++++sws+ +nsfvv+d++ fa+ +Lp++Fkhsnf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+++ll+
  TRIUR3_19594-P1  67 FLTKTYDMVDDPNTDSIMSWSAGNNSFVVWDPHAFATVLLPRHFKHSNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQRHLLK 151
                      9****************************************************************999.........***************** PP

                      XXXXXX CS
     HSF_DNA-bind  96 kikrkk 101
                      +i+r+k
  TRIUR3_19594-P1 152 NIRRRK 157
                      ****98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.109.5E-3963156IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.6E-6263156IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467859.11E-3663156IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.6E-186790IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004477.8E-3167156IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.6E-18105117IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340106130IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.6E-18118130IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 567 aa     Download sequence    Send to blast
MGIYGFFGPV GGSFSLEGFL GFGGMDPVPG LVKEEEEEGA HGRGDSPAVG AAPRPMEGLH  60
DAGPPPFLTK TYDMVDDPNT DSIMSWSAGN NSFVVWDPHA FATVLLPRHF KHSNFSSFVR  120
QLNTYGFRKV DPDRWEFANE GFLRGQRHLL KNIRRRKPPA HTASNQQSLG SYLEVGHFGY  180
DAEIDRLKRD KQLLMAEVVK LRQEQQNTKA RLKAMEDRLR GTEQKQQQMT SFMARILRNP  240
EFLKQLIAKN GMRKELHDAI SKKRRRRIDG GPEAYAVGAS SSSLEQELPV VFDSHGSVEL  300
LAEGSVPVEL LADGIPPDLE GSVELLADEI PSGLEGSVAL LADGLEGSVE LLVDGIPSDL  360
DGSGIDSNGV TEPQDYGLGT CEAQQNRAPG LFHDNFWEEL LNKGLSVEND EPEMEAAEEV  420
KMFTYMDEVE QEEDEPEPSY SPVQPAPGTV VVDISDAEDY LGHAPVLAAG DVVTGPDATV  480
GVEAHDDYFK VRRDCCGQLS FSAKQKCTAA LRMLALGTAI DADGFAKVQG LKSLLKTFRL  540
HQPQKQKYHK IPLPCSTKKQ FSRRTCL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-256215621129Heat shock factor protein 1
5d5v_B2e-256215621129Heat shock factor protein 1
5d5v_D2e-256215621129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1261266KKRRRR
2262267KRRRRI
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00371DAPTransfer from AT3G22830Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:18064488}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF2085440.0KF208544.1 Triticum aestivum heat shock factor A2b (HsfA2b) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020146162.10.0heat stress transcription factor A-2b-like
SwissprotQ6VBB21e-166HFA2B_ORYSJ; Heat stress transcription factor A-2b
TrEMBLM8AM260.0M8AM26_TRIUA; Heat stress transcription factor A-2b
STRINGTRIUR3_19594-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30837231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-99heat shock transcription factor A6B
Publications ? help Back to Top
  1. Rezaei MK,Shobbar ZS,Shahbazi M,Abedini R,Zare S
    Glutathione S-transferase (GST) family in barley: identification of members, enzyme activity, and gene expression pattern.
    J. Plant Physiol., 2013. 170(14): p. 1277-84
    [PMID:23664583]