PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_19435-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bZIP
Protein Properties Length: 275aa    MW: 29556.7 Da    PI: 7.5796
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_19435-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_151.52.1e-16157211360
                      XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklk 60 
                      ++kr rr+ +NRe+ArrsR+RK+a + eLe+ v++L + N    +  ++l++  ++ +
  TRIUR3_19435-P1 157 DVKRMRRMVSNRESARRSRKRKQAHLVELETQVDQLRGDNA---SIFKQLTDANQQFT 211
                      579*************************************7...66677777777655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003384.0E-17155219IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.703157209IPR004827Basic-leucine zipper domain
PfamPF001704.0E-14158209IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.34E-12158210No hitNo description
Gene3DG3DSA:1.20.5.1701.3E-12159210No hitNo description
CDDcd147021.95E-21160210No hitNo description
PROSITE patternPS000360162177IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0071333Biological Processcellular response to glucose stimulus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MKKCASELEL EAFIRGRGLG AEQKPGTAAV GTANGPYGLF SAADLSGAFG FADASSTWAI  60
VFTVLNFFRF FPTKQTLNGT IQNHLWSQSP NLGARHPAVS TTIESQSSIY AAASPTSATN  120
LSIKESQAFG GTSGSDSDSE SMFDDGGLCD NGTNPTDVKR MRRMVSNRES ARRSRKRKQA  180
HLVELETQVD QLRGDNASIF KQLTDANQQF TTAVTDNRIL KSDVEALRVK VQSSPMQSMA  240
SLESLEHSSR RQPGGGSDAV DVWGWDSSSN GAMSK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1171177RRSRKRK
2171178RRSRKRKQ
3173178SRKRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that possesses broad binding specificity for DNA promoter elements with the core sequence 5'-ACGT-3'. May be involved in the regulation of genes expressed during seed development (PubMed:7919992). Binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters (PubMed:11133985). {ECO:0000269|PubMed:11133985, ECO:0000269|PubMed:7919992}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3542770.0AK354277.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1006E09.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020186608.11e-139light-inducible protein CPRF2-like isoform X1
SwissprotQ6ETX07e-95RSBZ3_ORYSJ; bZIP transcription factor RISBZ3
TrEMBLM7YH770.0M7YH77_TRIUA; Light-inducible protein CPRF2
STRINGTRIUR3_19435-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20953796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24800.13e-33basic leucine zipper 9
Publications ? help Back to Top
  1. Onodera Y,Suzuki A,Wu CY,Washida H,Takaiwa F
    A rice functional transcriptional activator, RISBZ1, responsible for endosperm-specific expression of storage protein genes through GCN4 motif.
    J. Biol. Chem., 2001. 276(17): p. 14139-52
    [PMID:11133985]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  3. Izawa T,Foster R,Nakajima M,Shimamoto K,Chua NH
    The rice bZIP transcriptional activator RITA-1 is highly expressed during seed development.
    Plant Cell, 1994. 6(9): p. 1277-87
    [PMID:7919992]