PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIUR3_19098-P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | bHLH | ||||||||
Protein Properties | Length: 322aa MW: 35531.6 Da PI: 7.0525 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 29.1 | 1.8e-09 | 189 | 229 | 9 | 54 |
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r RR+ri +++ L++l+P +K++ a++L +A++YIk L TRIUR3_19098-P1 189 ARHRRERISERIRILQRLVPGG-----TKMDTASMLDEAIRYIKFL 229 699*****************87.....8****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.555 | 180 | 229 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.27E-15 | 185 | 247 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 7.8E-14 | 186 | 239 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 9.5E-15 | 186 | 235 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 7.3E-7 | 190 | 229 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.30E-6 | 203 | 234 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010197 | Biological Process | polar nucleus fusion | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 322 aa Download sequence Send to blast |
MDNMTHNSSS SSSWDLDMSL DVALGRHHHP LLFDHPTPTP PAPPPPPLSF HLHPPPPPPP 60 HQHHQQHQQH QLAIDPSPSS SLFPPPPHHH PHHLHHLDLA VDPHRHHHDY QRDQHPDEMQ 120 QRPPPAMEEG SQQLHHQDAV DEAEEELGAM KEMMYRIAAM QPVDIDPATI KKPRRRNVRI 180 SEDPQSVAAR HRRERISERI RILQRLVPGG TKMDTASMLD EAIRYIKFLK RQVQDLQHQP 240 APPQQQHYPG GGGSGGAGPS STAAVAGRPA FLPLSAGSLI DWAGLTRQVD IHGPTSSSSS 300 SSMGGALGFG FSTGGQSSHG MH |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription regulator required for seed dispersal. Involved in the differentiation of all three cell types required for fruit dehiscence. Acts as the key regulator in a network including SHP and ALC that controls specification of the valve margin. Works with ALC, SHP, and FUL to allow differentiation of the lignified valve layer, the spring-loaded mechanism of fruit that promotes opening. Regulates the expression of the YJ80 marker. {ECO:0000269|PubMed:15035986}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By FUL, which restrict its expression to the margins. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020176197.1 | 1e-134 | transcription factor HEC1-like | ||||
Swissprot | O81313 | 2e-43 | IND_ARATH; Transcription factor IND | ||||
TrEMBL | M8A0N4 | 0.0 | M8A0N4_TRIUA; Transcription factor IND | ||||
STRING | TRIUR3_19098-P1 | 0.0 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9051 | 32 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G09750.1 | 1e-36 | bHLH family protein |