PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIUR3_19005-P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | bHLH | ||||||||
Protein Properties | Length: 238aa MW: 25829.5 Da PI: 8.2216 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 26.3 | 1.3e-08 | 172 | 199 | 2 | 29 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCC CS HLH 2 rrahnerErrRRdriNsafeeLrellPk 29 ++ah +Er+RR+++N+ + Lr+l+P TRIUR3_19005-P1 172 KTAHITVERNRRKQMNEHLTVLRSLMPC 199 689************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 9.051 | 170 | 227 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.89E-7 | 170 | 201 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.19E-6 | 172 | 204 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 2.6E-7 | 172 | 200 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 6.0E-6 | 172 | 199 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MAEVLLVGAS LTAVQLLRYL CHPDSSHDHH PSKRPISLCL KEAKLSSQDL PLAHNILPCT 60 TQPAATKHKL VRVMGDALCD QLLVDVDGEF QLPTDAEDLF SILETWEDCV NGAAAALSPT 120 AGASSRGGLL GGSAPGNKSS KRRARQDECD GIAQAQKRQK CSPEEGGGAA PKTAHITVER 180 NRRKQMNEHL TVLRSLMPCF YVKRVLYYRY SARLSLIDSD INLHGSSSLG IGIQSYVK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020176650.1 | 8e-84 | transcription factor SPEECHLESS-like | ||||
TrEMBL | M7YNX1 | 1e-175 | M7YNX1_TRIUA; Transcription factor SPEECHLESS | ||||
STRING | TRIUR3_19005-P1 | 1e-176 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3484 | 35 | 77 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53210.1 | 1e-15 | bHLH family protein |