PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIUR3_18893-P1

Organism

Triticum urartu

Taxonomic ID

4572

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

G2-like

Protein Properties

Length: 183aa MW: 20532.9 Da PI: 6.6769

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIUR3_18893-P1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	84.9	8.2e-27	18	67	2	51
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 pr+rWt+eLH++F+eav+ LGG+++AtPk+il+lm+ kg++++hvkSHLQ TRIUR3_18893-P1 18 PRMRWTEELHRQFIEAVDCLGGQDEATPKRILQLMGAKGVSISHVKSHLQ 67 9************************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.1E-24	14	67	IPR009057	Homeodomain-like
PROSITE profile	PS51294	9.604	14	74	IPR017930	Myb domain
SuperFamily	SSF46689	4.48E-14	16	67	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.1E-21	18	67	IPR006447	Myb domain, plants
Pfam	PF00249	3.8E-7	19	67	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 183 aa Download sequence Send to blast
MRGFERRGVR QYNRSDEPRM RWTEELHRQF IEAVDCLGGQ DEATPKRILQ LMGAKGVSIS 60 HVKSHLQIPS IEEVLKSWEQ SRGRLPWNSI MPSEKVTSWA RHADSRTRQK SQQPTAGCDL 120 TLSIGRCKEE AMVVSSDADV SSTTTEESAA VPARDRGADD RHSDTAGLNL DLNLDLTVST 180 SWL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	5e-15	19	67	3	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	5e-15	19	67	3	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	5e-15	19	67	3	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	5e-15	19	67	3	51	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JF951940	2e-80	JF951940.1 Aegilops speltoides clone TaMYB57 MYB-related protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020187651.1	7e-52	two-component response regulator ARR11-like
TrEMBL	T1MM38	1e-132	T1MM38_TRIUA; Uncharacterized protein
STRING	TRIUR3_18893-P1	1e-133	(Triticum urartu)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5493	37	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14600.1	4e-23	G2-like family protein