PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_18790-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family GRAS
Protein Properties Length: 407aa    MW: 44382.3 Da    PI: 6.1432
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_18790-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS405.26.5e-1248240374374
             GRAS  74 sseelaalkl...fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetger 164
                        ++++a+ l   f+e +P+lkf+h+taNqaIlea++g++rvH++Df+i+qG+QWpaLlqaLa Rp+gpps+R+Tgvg+p+++++++l+++g++
  TRIUR3_18790-P1  82 LLDAAFADLLhahFYESCPYLKFAHFTANQAILEAFAGCRRVHVVDFGIKQGMQWPALLQALALRPGGPPSFRLTGVGPPQPDETDALQQVGWK 175
                      4444444444556********************************************************************************* PP

             GRAS 165 LakfAeelgvpfefnvlvakrledleleeLrvkp.......gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse 251
                      La+fA++++v+f+++ lva +l+dle+ +L+ +         E++aVn+v+++hrll+++++le+    vL +v+ ++P++v+vveqea+hns+
  TRIUR3_18790-P1 176 LAQFAHTIRVDFQYRGLVAATLADLEPFMLQPEGeedpneePEVIAVNSVFEMHRLLAQPGALEK----VLGTVRAVRPRIVTVVEQEANHNSG 265
                      ******************************544444557789***********************....************************* PP

             GRAS 252 sFlerflealeyysalfdsleak..............lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplse 331
                      +Fl+rf+e+l+yys++fdsle +              +p+++ +++++++++lgr+i+nvvacegaer+erhetl++Wr+rl++aGF++v+l++
  TRIUR3_18790-P1 266 TFLDRFTESLHYYSTMFDSLEGGssggpsevssgaaaAPAAAGTDQVMSEVYLGRQICNVVACEGAERTERHETLGQWRNRLGNAGFETVHLGS 359
                      ********************98889**********9999999**************************************************** PP

             GRAS 332 kaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      +a+kqa++ll+ ++ +dgy+vee++g+l+lgW++rpL+++SaWr
  TRIUR3_18790-P1 360 NAYKQASTLLALFAgGDGYKVEEKEGCLTLGWHTRPLIATSAWR 403
                      *******************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098555.7141382IPR005202Transcription factor GRAS
PfamPF035142.3E-12182403IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006808Biological Processregulation of nitrogen utilization
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009863Biological Processsalicylic acid mediated signaling pathway
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0010218Biological Processresponse to far red light
GO:0010233Biological Processphloem transport
GO:0042538Biological Processhyperosmotic salinity response
GO:2000033Biological Processregulation of seed dormancy process
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MANVMMLFLQ REDARDKSEK DPGATGRDEG GKEKGGVSKR VRGRPMWRRI LFASKKTRSI  60
MILNALTVIY GEAGPEAPDS SLLDAAFADL LHAHFYESCP YLKFAHFTAN QAILEAFAGC  120
RRVHVVDFGI KQGMQWPALL QALALRPGGP PSFRLTGVGP PQPDETDALQ QVGWKLAQFA  180
HTIRVDFQYR GLVAATLADL EPFMLQPEGE EDPNEEPEVI AVNSVFEMHR LLAQPGALEK  240
VLGTVRAVRP RIVTVVEQEA NHNSGTFLDR FTESLHYYST MFDSLEGGSS GGPSEVSSGA  300
AAAPAAAGTD QVMSEVYLGR QICNVVACEG AERTERHETL GQWRNRLGNA GFETVHLGSN  360
AYKQASTLLA LFAGGDGYKV EEKEGCLTLG WHTRPLIATS AWRLAAP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-52100402107378Protein SCARECROW
5b3h_A2e-52100402106377Protein SCARECROW
5b3h_D2e-52100402106377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway. Acts as a negative regulator of GAMYB gene expression. {ECO:0000269|PubMed:12011349, ECO:0000269|PubMed:12011350, ECO:0000269|PubMed:12468736}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX9786950.0JX978695.1 Triticum urartu clone BAC Tu-JJ1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003560731.10.0DELLA protein SLN1
SwissprotQ8W1270.0SLN1_HORVU; DELLA protein SLN1
TrEMBLM7ZPF80.0M7ZPF8_TRIUA; Uncharacterized protein
STRINGTRIUR3_18790-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP99838138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.11e-146GRAS family protein