PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_18663-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 325aa    MW: 35860.4 Da    PI: 7.7242
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_18663-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.83.9e-1830118198
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                      ffk +  +  ++++ ++lp +fa++++g    s  + l+  sg+sW++++   +  +++vl++GWkeFv+++g+ egD ++F+++g s+f   v
  TRIUR3_18663-P1  30 FFKLM--AGDFAQS-MSLPGRFAKNFNGR--ISEVINLKPHSGKSWSIEV--AGDTDEVVLRSGWKEFVDDHGIGEGDRLLFRYSGASSF--DV 114
                      55655..5555555.9*******888776..6779***************..*********************************99999..66 PP

                      EEE- CS
               B3  95 kvfr 98 
                       +f+
  TRIUR3_18663-P1 115 LMFD 118
                      6665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.2E-2324122IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.47E-2425126IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.50827120IPR003340B3 DNA binding domain
CDDcd100174.19E-1928118No hitNo description
PfamPF023627.0E-1630115IPR003340B3 DNA binding domain
SMARTSM010191.6E-1030120IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MQKMGKNCER CAEWQEHCYW SHMADENKHF FKLMAGDFAQ SMSLPGRFAK NFNGRISEVI  60
NLKPHSGKSW SIEVAGDTDE VVLRSGWKEF VDDHGIGEGD RLLFRYSGAS SFDVLMFDSA  120
GCQKPPSPRP VKRRGCDDND IAENSARAKG RRCGYHASNK AEERAPHPPS PAKGDGAGLE  180
MTLYRGTGKS IARADHGDVD MNHGEAAAKN RYYFCKNGPV SEFHLTEEDK EEISSIPVPV  240
EPRNPVFVNV MHASHVRGTT RTSIVVSDLP SETQTKVADC NANIFSKCGV KSGMLSFVRI  300
ALCCFHPQGV SSDFAGAWKK LAVNL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1128133RPVKRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020189910.11e-175B3 domain-containing protein Os03g0622200-like
SwissprotQ10GM32e-79Y3222_ORYSJ; B3 domain-containing protein Os03g0622200
TrEMBLT1MLH10.0T1MLH1_TRIUA; Uncharacterized protein
STRINGTRIUR3_18663-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56234179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.12e-24B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]