PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_18541-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family AP2
Protein Properties Length: 613aa    MW: 65996.5 Da    PI: 6.4701
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_18541-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP233.51.1e-10233289155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      s y+GV++++++gr++A+++d  +     ++ k  + g ++ +++Aa+a++ a++k++g
  TRIUR3_18541-P1 233 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQSrKGRQ-GGYDKEDKAARAYDLAALKYWG 289
                      57*******************5444.2455535555.7799999*************98 PP
2AP2422.3e-13332387155
              AP2   1 sgykGV....rwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GV    +++++ grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  TRIUR3_18541-P1 332 SKYRGVtryvTRHHQHGRWQARIGRVAG---NKDLYLGTFSTEEEAAEAYDIAAIKFRG 387
                      688888888899**********988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.73E-14233299IPR016177DNA-binding domain
PfamPF008473.2E-8233289IPR001471AP2/ERF domain
CDDcd000189.49E-17233299No hitNo description
Gene3DG3DSA:3.30.730.104.5E-11234297IPR001471AP2/ERF domain
PROSITE profilePS5103217.108234297IPR001471AP2/ERF domain
SMARTSM003801.3E-21234303IPR001471AP2/ERF domain
PRINTSPR003672.9E-6235246IPR001471AP2/ERF domain
CDDcd000182.63E-22332397No hitNo description
SuperFamilySSF541719.15E-16332397IPR016177DNA-binding domain
PfamPF008471.1E-7332387IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-16333396IPR001471AP2/ERF domain
PROSITE profilePS5103219.151333395IPR001471AP2/ERF domain
SMARTSM003801.3E-29333401IPR001471AP2/ERF domain
PRINTSPR003672.9E-6377397IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 613 aa     Download sequence    Send to blast
MASGNDWLGF SLSGQENPQP HQDSSPPADI DIAGASGFYG LPTQPAPDAQ LGVPGHHQPS  60
YGITEAFNRG AHEIHDWNMR GDLDYNGGAS ELSMLVGSSA VGGKRAAMEA ETEPKLEDFL  120
VGNSFVSEQD QAGGFLFSGV PMATSTNSNS RSNTMELSMI KSWLRDNQSL ALSMSTGSGS  180
HLPMAVLGGS PSGGVSESTS SENKRASGAM DSPGGAVEAV ARKSIDTFGQ RTSIYRGVTR  240
HRWTGRYEAH LWDNSCRREG QSRKGRQGGY DKEDKAARAY DLAALKYWGT TTTTNFPINT  300
YEKEVDEMKH MTRQEYIAYL RRNSSGFSRG ASKYRGVTRY VTRHHQHGRW QARIGRVAGN  360
KDLYLGTFST EEEAAEAYDI AAIKFRGLNA VTNFDMSRYD VKTILESSTL PVGGAARRPK  420
EVADHPEAGA TIWRAGMDGG VISQLTDVGM GTYASYHHGW PTIAFQQPSP LSVHYPYVAQ  480
PSRGWCKPEQ DASVATQSLQ DLQQLHLGTA AHNYFQASSS STVYNGGGYQ QGTSGNAFLM  540
PASTVVDEQG HSSTATNQGS TCSYGDEEGK LNLGYDAMAM ASTGADPYAA APTVSIARAN  600
GYSNNWSSPF NGM
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis. {ECO:0000269|PubMed:12172019}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00610ChIP-seqTransfer from AT5G17430Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020183326.10.0AP2-like ethylene-responsive transcription factor PLT2
SwissprotQ8LSN21e-125BBM2_BRANA; AP2-like ethylene-responsive transcription factor BBM2
TrEMBLA0A446VHB00.0A0A446VHB0_TRITD; Uncharacterized protein
TrEMBLM8A5V40.0M8A5V4_TRIUA; AP2-like ethylene-responsive transcription factor BBM2
STRINGTRIUR3_18541-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP156937110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17430.11e-116AP2 family protein