PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_18279-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 573aa    MW: 62888.7 Da    PI: 6.0595
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_18279-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.87.9e-13392439355
                      HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                      ++h + ErrRR+++N+ f  L++l+P+        K++Ka+iL +++ Y+++L+
  TRIUR3_18279-P1 392 KNHVISERRRREKLNEMFLILKSLVPSiH------KVDKASILAETIAYLRELE 439
                      6899***********************66......****************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142153.4E-3925179IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.272389438IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.06E-17391449IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.8E-10392439IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.89E-15392443No hitNo description
Gene3DG3DSA:4.10.280.103.4E-17393449IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.6E-15395444IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009957Biological Processepidermal cell fate specification
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 573 aa     Download sequence    Send to blast
MALPVIRPSQ EEPTLPPPAR KQFSNQLAAA VRSINWSYAI FWVLTWKDGF YNGEIKTRKV  60
TSSADLTADQ LVLQRSEQLR ELYESLLSGQ CDHRARRPAA ALSPEDLGDA EWYYTVCMSY  120
AFRPGQGLPG RSFAGNEHVW LCNAQCADTK TFQRALLAKT VACIPLMGGV LELGTTDTCM  180
GLHWHLLENG NVGLASAAVL EDMGMVNRIR TSFWDLKFPT CSKSEEPNSS PSVDDTGDAD  240
IVFDVLKHDT MATMITRELE PGEVECLSDG NLERITKEIN GFYGLCDELD VGALEENWIM  300
GGSFEVMSSP EAPPAPVATD GVTSGVVAFS SVGPSHPSCF AAWKRSWHSA KDVVVPVAGE  360
SQKLLKKALA GGAWANNDDD GTARAQESTN TKNHVISERR RREKLNEMFL ILKSLVPSIH  420
KVDKASILAE TIAYLRELEQ KVEELESNRA AGTKVVRKRH EVGGKKVLAG SKRKALELGG  480
EDTPLPKEDG PSNIVNVTVT DKEVLLEVQC RWKELLMTRV FDAIKSLRLD VLSVRASTPD  540
GLLALKIRAQ FAGPGAVEPG MISEALQKAI RRR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5t0f_A2e-13161772176Transcription factor MYC3
5t0q_A2e-13161772176Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1397402ERRRRE
2398403RRRREK
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator. Control tissue-specific synthesis of anthocyanin pigments in various parts of the maize plant.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF0810300.0EF081030.1 Triticum urartu clone BAC 404H6 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020177997.10.0anthocyanin regulatory R-S protein-like
RefseqXP_020177998.10.0anthocyanin regulatory R-S protein-like
SwissprotP130270.0ARRS_MAIZE; Anthocyanin regulatory R-S protein
TrEMBLM8AMT10.0M8AMT1_TRIUA; Anthocyanin regulatory R-S protein
STRINGTRIUR3_18279-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP93233109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63650.36e-94bHLH family protein
Publications ? help Back to Top
  1. Pattanaik S,Xie CH,Yuan L
    The interaction domains of the plant Myc-like bHLH transcription factors can regulate the transactivation strength.
    Planta, 2008. 227(3): p. 707-15
    [PMID:18075757]
  2. Huang ZA, et al.
    The upregulation of NtAN2 expression at low temperature is required for anthocyanin accumulation in juvenile leaves of Lc-transgenic tobacco (Nicotiana tabacum L.).
    J Genet Genomics, 2012. 39(3): p. 149-56
    [PMID:22464474]
  3. Perrot GH,Cone KC
    Nucleotide sequence of the maize R-S gene.
    Nucleic Acids Res., 1989. 17(19): p. 8003
    [PMID:2798145]
  4. Li P, et al.
    Combined bulked segregant sequencing and traditional linkage analysis for identification of candidate gene for purple leaf sheath in maize.
    PLoS ONE, 2018. 13(1): p. e0190670
    [PMID:29304111]