PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_17853-P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family HD-ZIP
Protein Properties Length: 203aa    MW: 22098.9 Da    PI: 9.8729
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_17853-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.91.9e-1993147256
                      T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      rk+ ++t+eq   Le+ F+ ++ +s+ e+++LA +lgL+ rqV vWFqNrRa+ k
  TRIUR3_17853-P1  93 RKKLRLTAEQAALLEKSFRAHNVLSHGEKQDLAGQLGLKPRQVEVWFQNRRARTK 147
                      788899***********************************************98 PP

2HD-ZIP_I/II112.42.9e-3693181189
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                      +kk+rl++eq++lLE+sF++++ L++ +K++la +Lgl+prqv+vWFqnrRARtk+kq+E d+e L++++++l+++n+rL++e +e r+
  TRIUR3_17853-P1  93 RKKLRLTAEQAALLEKSFRAHNVLSHGEKQDLAGQLGLKPRQVEVWFQNRRARTKLKQTELDCELLRQWCERLSDDNARLRRELAETRA 181
                      69*********************************************************************************998775 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.4E-1971150IPR009057Homeodomain-like
SuperFamilySSF466891.07E-1878150IPR009057Homeodomain-like
PROSITE profilePS5007117.29789149IPR001356Homeobox domain
SMARTSM003893.2E-1691153IPR001356Homeobox domain
PfamPF000468.3E-1793147IPR001356Homeobox domain
CDDcd000866.05E-1493150No hitNo description
PRINTSPR000313.0E-6120129IPR000047Helix-turn-helix motif
PROSITE patternPS000270124147IPR017970Homeobox, conserved site
PRINTSPR000313.0E-6129145IPR000047Helix-turn-helix motif
SMARTSM003407.9E-11149192IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MSSASRESLE AEELVDTRLS LVIGAGTHPP PVQAPLLPPE AEGRVPGNTG RKKGEKWIVG  60
GSTRQHGKRA RAVHGGSDID DGDDGGDSAG RARKKLRLTA EQAALLEKSF RAHNVLSHGE  120
KQDLAGQLGL KPRQVEVWFQ NRRARTKLKQ TELDCELLRQ WCERLSDDNA RLRRELAETR  180
AVLLVGGSQG STLTGCPSCN RLA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19096RARKKLR
2141149RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020189356.11e-104putative homeobox-leucine zipper protein HOX26
SwissprotQ67UX65e-46HOX26_ORYSJ; Putative homeobox-leucine zipper protein HOX26
TrEMBLM7Z2Y01e-143M7Z2Y0_TRIUA; Putative homeobox-leucine zipper protein HOX26
STRINGTRIUR3_17853-P11e-144(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP83153249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22800.13e-34HD-ZIP family protein