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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIUR3_16941-P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 674aa MW: 73884 Da PI: 7.1257 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 51.9 | 1.3e-16 | 35 | 89 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 r+ +++t++q+++Le +F + +p++++r +++++gLt +qVk+WFqN+R+ +k TRIUR3_16941-P1 35 RRLQRLTPQQTQVLEGFFGICAHPDENQRMGMSESTGLTMQQVKFWFQNKRTHMK 89 666899**********************************************998 PP | |||||||
2 | START | 93.4 | 4.4e-30 | 188 | 403 | 1 | 203 |
HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....... CS START 1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....... 77 ela++a+ e+v +a+a+ p+W+ ++ + +n++ + q+f + + +ea ra +v m++ + v ++d+ +++ ++ TRIUR3_16941-P1 188 ELAQSAMHEFVVLAEAGGPLWMPVPggsfDVLNKMAYAQTFGARSSanvilgFMTEATRADDMVMMDAKQIVDYIMDSE-CYTSFCTglltsan 280 57999************************************66555899***9****************9999999999.99999999999666 PP EEEEEEEECTT...EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEE CS START 78 kaetlevissg...galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwv 167 ++++ +s+ ga +l + e++++splvp R+ +fvR++r ++ g+ +ivdvS+d+ + v++++ pSg l++++ s+vt++ TRIUR3_16941-P1 281 TTKIYKWPTSAgynGAMHLVTVETVFPSPLVPsRKCTFVRCCRDMQNGTVIIVDVSLDNGDGT------VKCHKMPSGVLVRSLNSDASQVTVI 368 666666677769**********************************************99984......79*********************** PP E-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXX CS START 168 ehvdlkgrlphwllrslvksglaegaktwvatlqrq 203 ehv +++ h+l+r+ + sgl++ga++wv+ rq TRIUR3_16941-P1 369 EHVQVNDTGLHELYRPSL-SGLMFGARRWVSSIVRQ 403 ****************98.699********876665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.2E-17 | 19 | 85 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.43E-16 | 27 | 91 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 14.803 | 31 | 91 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.0E-13 | 33 | 95 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.51E-14 | 34 | 90 | No hit | No description |
Pfam | PF00046 | 3.2E-14 | 35 | 89 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 66 | 89 | IPR017970 | Homeobox, conserved site |
CDD | cd14686 | 0.00255 | 137 | 158 | No hit | No description |
PROSITE profile | PS50848 | 20.364 | 179 | 409 | IPR002913 | START domain |
SuperFamily | SSF55961 | 4.4E-16 | 184 | 403 | No hit | No description |
CDD | cd08875 | 2.96E-68 | 186 | 405 | No hit | No description |
SMART | SM00234 | 3.6E-8 | 188 | 406 | IPR002913 | START domain |
Pfam | PF01852 | 1.4E-22 | 188 | 400 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 7.0E-4 | 254 | 373 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 3.43E-10 | 447 | 627 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 674 aa Download sequence Send to blast |
MPQPQQDRPA RDNDLDISQG NSDGQDGAEG SQPKRRLQRL TPQQTQVLEG FFGICAHPDE 60 NQRMGMSEST GLTMQQVKFW FQNKRTHMKH VTGKEETYRM KAQNEMLREE NKRLASAAKT 120 SFCPSCVALP GLSPSGEVQR LRQENEQLKQ QLSQLRAEAH PSSSRPFQLD PSMENITGRE 180 NDMDAIAELA QSAMHEFVVL AEAGGPLWMP VPGGSFDVLN KMAYAQTFGA RSSANVILGF 240 MTEATRADDM VMMDAKQIVD YIMDSECYTS FCTGLLTSAN TTKIYKWPTS AGYNGAMHLV 300 TVETVFPSPL VPSRKCTFVR CCRDMQNGTV IIVDVSLDNG DGTVKCHKMP SGVLVRSLNS 360 DASQVTVIEH VQVNDTGLHE LYRPSLSGLM FGARRWVSSI VRQSARMRDL FVVSKSASNG 420 NTNGRKTLMK IADGLLAGYA SGIAAVPGGG WTILRGAGTE DDIRISYRRN NDDSNTAIVS 480 VCASFHLPVP HRVTFDLLKN NLLRPKWDVL VNGNSVREEV AVCKGVGGGI DDVVSILHLK 540 DPPTGENRDN IMILQNSSYD VSGAFMVYCP VNIQLMNEIM SPSDTAESNK VSLYPTGFYL 600 LPVEDTALGL GEGGATLVTV GFQIMLKLAR GTGLYPRSAS TAVGLMTENI GTIKKTLTSS 660 HPIFYRRQPP NNFI |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JF332036 | 0.0 | JF332036.1 Triticum turgidum subsp. durum HD-Zip IV transcription factor GL9H2 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020164122.1 | 0.0 | homeobox-leucine zipper protein TF1-like | ||||
Swissprot | Q5ZAY0 | 0.0 | TF1_ORYSJ; Homeobox-leucine zipper protein TF1 | ||||
TrEMBL | M7YX17 | 0.0 | M7YX17_TRIUA; Homeobox-leucine zipper protein TF1 | ||||
STRING | TRIUR3_16941-P1 | 0.0 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10475 | 28 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G04890.1 | 1e-100 | protodermal factor 2 |
Publications ? help Back to Top | |||
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