PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_16715-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family GRAS
Protein Properties Length: 411aa    MW: 45968.5 Da    PI: 6.6699
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_16715-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS402.63.8e-123444112373
             GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                      ++++++c +a +++d   ++ l+++l++l+s +gdpmqRl ay++e+L arl+ s+s+lyk+l+++e +   sse ++ ++ + e++P+++fs+
  TRIUR3_16715-P1  44 KQVIIACGKAAAENDI-HTEVLISELRQLVSISGDPMQRLGAYMLEGLVARLSFSGSKLYKSLKCKEPT---SSELISHMHHLCEICPFYRFSY 133
                      7889999999888776.689************************************************9...999999999************* PP

             GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrle 187
                      + aN aI ea+++e+ vHiiDf i qG QW+++++aLa+R++gpp lRiTg+++++s   +   l  +g rL+++ +++g+pfefn+ v+ + +
  TRIUR3_16715-P1 134 MSANGAIAEAIKSENFVHIIDFHIAQGSQWITIIEALAARSGGPPCLRITGIDDSNSAyaRGGGLDMVGTRLHSVSASCGMPFEFNA-VHAASH 226
                      ******************************************************988899999************************.688999 PP

             GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpresee 281
                      ++ le+L+++pgE+++Vn++++lh+++desvs+e++r+++++++kslsP+vv++veqe+++n+++F+ r le++eyy+a+f+s+++ lpr+++ 
  TRIUR3_16715-P1 227 EVYLEHLDIRPGEVIVVNFAYELHHTPDESVSTENHRNRIIRMIKSLSPRVVTLVEQESNTNTAPFFSRYLETFEYYTAMFESIDVALPRDDKR 320
                      999******************************************************************************************* PP

             GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                      ri+ E+++l+r++ n++acegaer+er e ++kW++r+ +aGF+p+pls+ +++++k+ll +++s  yr+ee++g l+lgWk+r Lv+ SaW
  TRIUR3_16715-P1 321 RISTEQHCLARDVINLIACEGAERVERLEAFGKWKARFAMAGFRPYPLSSLVNNTIKTLLDNYHSC-YRLEERDGVLYLGWKSRVLVVSSAW 411
                      ****************************************************************55.************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098563.03217393IPR005202Transcription factor GRAS
PfamPF035141.3E-12044411IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
LENAILGPEL DISCDSPKSL LQAKNLLKQG NWRQVLGINT GDLKQVIIAC GKAAAENDIH  60
TEVLISELRQ LVSISGDPMQ RLGAYMLEGL VARLSFSGSK LYKSLKCKEP TSSELISHMH  120
HLCEICPFYR FSYMSANGAI AEAIKSENFV HIIDFHIAQG SQWITIIEAL AARSGGPPCL  180
RITGIDDSNS AYARGGGLDM VGTRLHSVSA SCGMPFEFNA VHAASHEVYL EHLDIRPGEV  240
IVVNFAYELH HTPDESVSTE NHRNRIIRMI KSLSPRVVTL VEQESNTNTA PFFSRYLETF  300
EYYTAMFESI DVALPRDDKR RISTEQHCLA RDVINLIACE GAERVERLEA FGKWKARFAM  360
AGFRPYPLSS LVNNTIKTLL DNYHSCYRLE ERDGVLYLGW KSRVLVVSSA W
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-61454116374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2525670.0AK252567.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf156f06, mRNA sequence.
GenBankAK3609130.0AK360913.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1128D13.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020180371.10.0scarecrow-like protein 21
RefseqXP_020180372.10.0scarecrow-like protein 21
RefseqXP_020180373.10.0scarecrow-like protein 21
SwissprotQ8GVE10.0CIGR2_ORYSJ; Chitin-inducible gibberellin-responsive protein 2
TrEMBLT1MG680.0T1MG68_TRIUA; Uncharacterized protein
STRINGTRIUR3_16715-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP151337117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]
  3. Tanabe S, et al.
    The elicitor-responsive gene for a GRAS family protein, CIGR2, suppresses cell death in rice inoculated with rice blast fungus via activation of a heat shock transcription factor, OsHsf23.
    Biosci. Biotechnol. Biochem., 2016. 80(1): p. 145-51
    [PMID:26287768]