PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_16344-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family HB-other
Protein Properties Length: 662aa    MW: 73454.9 Da    PI: 6.4798
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_16344-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.41.4e-094765082254
                      SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      +ryp+  +++ LAk++gLt +qV++WF N R +
  TRIUR3_16344-P1 476 SRYPTDGDKQMLAKQTGLTRNQVSNWFINARVR 508
                      79*****************************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.102.5E-5385333IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS5029343.18290335IPR013026Tetratricopeptide repeat-containing domain
PROSITE profilePS500057.99590123IPR019734Tetratricopeptide repeat
SMARTSM000283190123IPR019734Tetratricopeptide repeat
PfamPF134321.0E-497154No hitNo description
SuperFamilySSF484521.14E-3497332IPR011990Tetratricopeptide-like helical domain
SMARTSM0002815124157IPR019734Tetratricopeptide repeat
PROSITE profilePS500055.664124157IPR019734Tetratricopeptide repeat
SMARTSM0002830166199IPR019734Tetratricopeptide repeat
PROSITE profilePS500056.284166199IPR019734Tetratricopeptide repeat
PROSITE profilePS500059.853200233IPR019734Tetratricopeptide repeat
SMARTSM000280.0023200233IPR019734Tetratricopeptide repeat
PfamPF134324.3E-9206266No hitNo description
PROSITE profilePS5000511.771234267IPR019734Tetratricopeptide repeat
SMARTSM000280.0022234267IPR019734Tetratricopeptide repeat
PROSITE profilePS500059.204268301IPR019734Tetratricopeptide repeat
SMARTSM000280.029268301IPR019734Tetratricopeptide repeat
PfamPF145591.3E-6283334No hitNo description
SMARTSM000286.3302335IPR019734Tetratricopeptide repeat
PROSITE profilePS500055.074302335IPR019734Tetratricopeptide repeat
SMARTSM003896.7E-5451516IPR001356Homeobox domain
PROSITE profilePS5007111.256476512IPR001356Homeobox domain
CDDcd000862.25E-9476513No hitNo description
SuperFamilySSF466893.94E-12476520IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.7E-17477516IPR009057Homeodomain-like
PfamPF059202.5E-13478508IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005768Cellular Componentendosome
GO:0005802Cellular Componenttrans-Golgi network
GO:0005886Cellular Componentplasma membrane
GO:0009506Cellular Componentplasmodesma
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 662 aa     Download sequence    Send to blast
MEKDWPIPKV DTIENDGPEW LFTLLNPLWD TTRMVVLMIM WRAWDPSPPA DSGLAPAPWD  60
ETSRDYLTFV KELAVLRTRA DASRSREEAF DNHMVIGRAL SEHRLFRDAL ASFRRACELQ  120
PTDVRPHFRA GNCLYALGRH AEAKEEFLLA LEAAEAGNSQ SADILPQIHV NLGIAMEAEG  180
MVLGACEHYR EAAILCPSHA RALKLLGSAL FGVGEYRAAE KALEEAIFLK PDYADAHCDL  240
GSALHAVGDD DRAVQEFQKA IDLKPGHVDA LYNLGGLNMD ACRFVRAAEM YTRVLSIRPN  300
HWRAQLNKAV ALLGQGESEE AKKALKEAFK MTQRVEVYDA ISHLKTLQKK KLKPSKGKHD  360
AQGEEAFVIV EASKFKRVGS KTTLRQDLAN ALDIRAFERT TKLGHCDAEL LRKEMNETDV  420
PVSYSGTGIP EKSIRKAALE KKPREKSSVM GRTDAASGPR IAIAGLDGAT TSNSGSRYPT  480
DGDKQMLAKQ TGLTRNQVSN WFINARVRLW KPMMEEIHNL EMRQVHQDPP QQHVVHGQSH  540
QHSSQQQQQH NGNRSEPCDS NPDRLRQIST SRVRLEEELE EDGVLGKLAG GWGGEGLRLL  600
TTGEKSSMPE EIASVEAARR LGEESAVTSW EESAATSRIG RRCESGEQIL EGGLEGSEAR  660
GN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2fo7_A1e-161703341135SYNTHETIC CONSENSUS TPR PROTEIN
2hyz_A1e-161703341135SYNTHETIC CONSENSUS TPR PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3564310.0AK356431.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1034M08.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020178094.10.0uncharacterized TPR repeat-containing protein At1g05150-like
SwissprotO230520.0Y1515_ARATH; Uncharacterized TPR repeat-containing protein At1g05150
TrEMBLT1MF700.0T1MF70_TRIUA; Uncharacterized protein
STRINGTRIUR3_16344-P10.0(Triticum urartu)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27990.13e-20BEL1-like homeodomain 8
Publications ? help Back to Top
  1. Nelson CJ,Hegeman AD,Harms AC,Sussman MR
    A quantitative analysis of Arabidopsis plasma membrane using trypsin-catalyzed (18)O labeling.
    Mol. Cell Proteomics, 2006. 5(8): p. 1382-95
    [PMID:16635983]
  2. Niittylä T,Fuglsang AT,Palmgren MG,Frommer WB,Schulze WX
    Temporal analysis of sucrose-induced phosphorylation changes in plasma membrane proteins of Arabidopsis.
    Mol. Cell Proteomics, 2007. 6(10): p. 1711-26
    [PMID:17586839]
  3. Marmagne A, et al.
    A high content in lipid-modified peripheral proteins and integral receptor kinases features in the arabidopsis plasma membrane proteome.
    Mol. Cell Proteomics, 2007. 6(11): p. 1980-96
    [PMID:17644812]