PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_16157-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 303aa    MW: 33977 Da    PI: 7.6945
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_16157-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B336.49e-123691150
                     EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE CS
               B3  1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkl 50
                     f+k ltpsdv+k++rlv+pk++ae++      +++ e++  l++ede g+ W+++l
  TRIUR3_16157-P1 36 FEKPLTPSDVGKLNRLVIPKQHAERYfplnggDSPGEKDLLLSFEDEAGKPWRFRL 91
                     99****************************87445557778999**********98 PP
2B370.62.1e-22891811498
                      T-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS..SEE..EEEEE- CS
               B3  14 grlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr..sefelvvkvfr 98 
                       rlv+pk++ae++      +++ e++  l++ede g+ W++++ y+ +s++yvl+kGW+++vk+++L++gD+v F++ +   ++ +l+++ +r
  TRIUR3_16157-P1  89 FRLVIPKQHAERYfplnggDSPGEKDLLLSFEDEAGKPWRFRYAYCTSSQSYVLAKGWSRYVKEKQLDAGDIVHFERGRGlgTGDRLFIGCRR 181
                      58***************87445557778999*********************************************76544344455555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.9E-173290IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.44E-113392IPR015300DNA-binding pseudobarrel domain
CDDcd100172.57E-1934168No hitNo description
SMARTSM010195.2E-1736182IPR003340B3 DNA binding domain
PROSITE profilePS5086311.47676182IPR003340B3 DNA binding domain
SuperFamilySSF1019365.89E-1989169IPR015300DNA-binding pseudobarrel domain
PfamPF023626.8E-2089181IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.1E-2691187IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010073Biological Processmeristem maintenance
GO:0010358Biological Processleaf shaping
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MAMHPLSQGH PQAWPWGVAM YTNLHYHHQY GREHLFEKPL TPSDVGKLNR LVIPKQHAER  60
YFPLNGGDSP GEKDLLLSFE DEAGKPWRFR LVIPKQHAER YFPLNGGDSP GEKDLLLSFE  120
DEAGKPWRFR YAYCTSSQSY VLAKGWSRYV KEKQLDAGDI VHFERGRGLG TGDRLFIGCR  180
RRGESAPPPP VRVPPPALNA GEQQPWSPMC YSTSGSYPTS PANSYAYRRS VEQDHSDMLH  240
AGESQREADA KSSTASAAPS RRLRLFGVNL DCGPEPEAEA ITPTYGYTHQ SPYAAVATVP  300
SYW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A1e-38321824113B3 domain-containing transcription factor NGA1
5os9_B1e-38321824113B3 domain-containing transcription factor NGA1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020185469.11e-171B3 domain-containing protein Os11g0156000-like
SwissprotQ53QI01e-119Y1160_ORYSJ; B3 domain-containing protein Os11g0156000
TrEMBLT1MEP60.0T1MEP6_TRIUA; Uncharacterized protein
STRINGTRIUR3_16157-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24463889
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06250.22e-47B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]