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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIUR3_16070-P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | G2-like | ||||||||
Protein Properties | Length: 257aa MW: 28656.3 Da PI: 7.8133 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 37.4 | 5.6e-12 | 68 | 96 | 1 | 29 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtP 29 kprl+WtpeLHerF +av++LGG++ P TRIUR3_16070-P1 68 KPRLKWTPELHERFADAVKKLGGPDSEPP 96 79**********************97666 PP | |||||||
2 | G2-like | 47.9 | 2.9e-15 | 107 | 136 | 26 | 55 |
G2-like 26 kAtPktilelmkvkgLtlehvkSHLQkYRl 55 +AtPk+i+++m+++gLtl+h+kSHLQk+Rl TRIUR3_16070-P1 107 EATPKAIMRVMGIPGLTLYHLKSHLQKFRL 136 7****************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.7E-27 | 66 | 137 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 6.45E-13 | 67 | 137 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.3E-7 | 68 | 94 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.5E-8 | 70 | 134 | IPR001005 | SANT/Myb domain |
TIGRFAMs | TIGR01557 | 1.3E-9 | 106 | 137 | IPR006447 | Myb domain, plants |
Pfam | PF14379 | 2.0E-24 | 183 | 229 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MCSMQAEHCQ YMTEPEQMYH QQQQQFHDHR QHMSSRPSLS PEKKFFMKGQ GGAGGGGDSG 60 LILSTDAKPR LKWTPELHER FADAVKKLGG PDSEPPSDGY ITDTIAEATP KAIMRVMGIP 120 GLTLYHLKSH LQKFRLSKNL QAQANAVNAK NVYGFGTATD KACEGHGSSG DHLNRETNTS 180 RSMHINDALQ MQIEVQRRLH EQIEVQRHLQ LRIEAQGKYL HSVLEKAQEA LGKQHVVAGL 240 EAAEPTQRLP ELASSQM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 6e-16 | 68 | 138 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 6e-16 | 68 | 138 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 5e-16 | 68 | 138 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 5e-16 | 68 | 138 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 5e-16 | 68 | 138 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 5e-16 | 68 | 138 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 6e-16 | 68 | 138 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 6e-16 | 68 | 138 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 6e-16 | 68 | 138 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 6e-16 | 68 | 138 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 6e-16 | 68 | 138 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 6e-16 | 68 | 138 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that may act on the GAL1 promoter (PubMed:12008900). Acts redundantly with MYR2 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269|PubMed:21255164, ECO:0000305|PubMed:12008900}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK362598 | 0.0 | AK362598.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2008K07. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020161185.1 | 1e-140 | myb-related protein 1-like | ||||
Swissprot | Q9FK47 | 1e-70 | PHLA_ARATH; Myb-related protein 1 | ||||
TrEMBL | M7YY44 | 0.0 | M7YY44_TRIUA; Myb family transcription factor APL | ||||
STRING | TRIUR3_16070-P1 | 0.0 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3574 | 38 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18240.4 | 6e-60 | myb-related protein 1 |
Publications ? help Back to Top | |||
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